Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq236 194 2e-44 >seq236 Length=53426 Score = 194 bits (214), Expect = 2e-44 Identities = 1181/1873 (63%), Gaps = 49/1873 (3%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| || |||| | || | | ||||| || |||||||| || || || ||| Sbjct 6934 GTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGA 6875 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 || || |||| || ||| |||||||| || | ||| | ||||| || Sbjct 6874 CCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATG 6815 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || || |||| ||||| ||||| |||||||| || | |||||||||||| | | | Sbjct 6814 TGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACA 6755 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 || |||| ||| ||||| | || ||| ||| | |||||||| || || | Sbjct 6754 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATG 6695 Query 75617 TTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | | || |||||||| ||| |||| || || ||||| || |||| | Sbjct 6694 TTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGAC 6635 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || | | ||| | | | || || || || |||| || || || || Sbjct 6634 CAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCG 6575 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | | || | ||| ||| || || || || || || | | || ||||| ||| Sbjct 6574 GCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCC 6515 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | ||| || | || ||||| |||||||| || | | || || || | ||| Sbjct 6514 AGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACC- 6456 Query 75854 TGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACAT 75911 ||| || |||| | || || || | | ||| ||||| || || || ||| |||| Sbjct 6455 -GTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTGACAT 6397 Query 75912 CCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAG 75971 |||| | ||| |||| || || || | | ||| |||||| || ||| |||||| | Sbjct 6396 CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATGATTCGTAGG 6337 Query 75972 TCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGA 76031 || ||| | || | || | ||||| | || | | || || || || | Sbjct 6336 GACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAA 6277 Query 76032 AAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAG--AAT 76089 | |||| ||| || || | | || || || ||||| || ||| | | || Sbjct 6276 AGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAGGGC--ATGCGCAGGGCAAG 6219 Query 76090 AAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 76149 || || || || || ||||| || |||| ||||| |||| || | | ||||| | Sbjct 6218 GAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTG-T 6160 Query 76150 TTCAG--CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 76207 | | | || ||||| |||||| | || | ||| || || || ||||| || | |||| Sbjct 6159 TGCGGGCCTCCTGGAC-AGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACA 6101 Query 76208 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT-----ATC-ACA 76261 || || || || || | || || ||| ||| | || || ||| ||| Sbjct 6100 ACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAATCGACA 6041 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA--- 76318 | | || || | ||| || | || ||||| || ||||||| | | ||| Sbjct 6040 TAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGA---GCACAG 5984 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 || | || ||||| ||||| || || | ||| ||||| || || | |||||| Sbjct 5983 TACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTG 5924 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 ||||| ||| || | ||||| || || | || || | ||||| || |||| | | Sbjct 5923 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCT 5864 Query 76439 TCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGT-ATCGCTTCTCTC 76496 || | || || | ||| | | ||| ||| || || ||| | | | || ||| Sbjct 5863 TCCAGGATGGAATACCACA-GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTC 5808 Query 76497 --TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAA-CA-TCATCCAAACCA 76552 | || |||| ||| || || || || ||| ||| | || ||| ||| ||| Sbjct 5807 CCTCTCGTATTTCTCATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCA 5750 Query 76553 GGACATTCATTCGGACACATCAATGACCACTC-ACCATCTTCCTTAACCCGTTTCATAAA 76611 || ||||| || || ||||| | | ||| || | ||||| | ||| || ||||| || Sbjct 5749 GGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTCATGAA 5691 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||| || ||||| ||||||| || | || || | | ||||| || || Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||| ||||| |||||||| | | || | ||||| || || || || || || Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | |||| || || || ||||| ||||| || | ||||||||||||||| || | || Sbjct 5570 AAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGAC 5511 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || | ||| |||||||| |||||||| ||||| || || |||| ||| ||| || Sbjct 5510 TCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGT 5451 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 ||||| || | | | ||| || || || ||||| || || || | ||||| Sbjct 5450 GGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACA 5391 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 |||| ||||||||||| ||||| || ||||| ||| |||||| | | || || Sbjct 5390 TGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCA 5331 Query 76972 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 |||| || || || ||||| || |||| || ||||| ||||||||||| Sbjct 5330 TGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAA 5271 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC----CCATTGAT 77087 | || ||| | || |||||||| || | || || || || || ||| Sbjct 5270 GAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGAT 5211 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || |||| || ||||| | ||| ||||| || || || ||| |||| || | Sbjct 5210 G----CCAACAGACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAA 5155 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 |||| | |||||| |||| ||| || || || || || | ||| ||||||| Sbjct 5154 GCTTCAGAAGGTATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 5095 Query 77208 TTTCGTAAATAAT 77220 ||||| | ||| Sbjct 5094 GATCGTAGACAAT 5082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920390839040