Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq330 143 2e-29
seq301 141 7e-29
seq23 113 3e-20
seq61 98.7 7e-16
>seq330
Length=39978
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GC 44169
|| || | ||| | || |||| ||| || ||||||||||| ||||||||||| ||| |
Sbjct 14742 CCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 14801
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
|| | ||| |||| ||||||||||| || ||||||||||| |||||||| || | |||
Sbjct 14802 AAGGT-GCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 14860
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289
| || ||||| ||| ||||| ||| | | | |||||||||| ||||||||
Sbjct 14861 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 14920
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| | || || ||||| || || || ||||| ||||| || |||||
Sbjct 14921 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 140 bits (154), Expect = 2e-28
Identities = 162/213 (76%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187
|| |||||||| ||||||||||| ||||||||||| ||| | || | ||| |||| ||
Sbjct 14988 ACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT-GCGACCGTCCTC 15046
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || |||||||| | |||||||||||| | || | ||| ||||| |||
Sbjct 15047 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 15106
Query 44248 TATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| || || || ||| | |||||||| | ||||| ||||||| || || ||
Sbjct 15107 AATCTT-TGATTTGACATTGT--CGATGGTGTCTGATGATTCAACCTCCAATGTGATGGT 15163
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | ||||| |||||||| |||||
Sbjct 15164 CTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196
Score = 134 bits (148), Expect = 1e-26
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186
|||||||| || ||| |||||| ||||||||||| |||| ||||| || | || |
Sbjct 15502 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT--CGGCCATCCT 15559
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| || ||||| || || || |||| ||||||||| || | ||| | |||||||| |||
Sbjct 15560 CGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCT 15619
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||||| | | ||||| |||| || || ||||| | || || ||||
Sbjct 15620 GGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCT 15679
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
| || ||||||||||| ||||||||||||||| ||
Sbjct 15680 TGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTG 15714
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| |||||| ||||||||||| |||| ||| || | || ||
Sbjct 15216 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 15275
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||||| |||||||| || | ||| | || ||||| |||
Sbjct 15276 AGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGG 15335
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | ||||| || | || |||||||| | || || ||||||
Sbjct 15336 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTT 15395
Query 44309 CCCGTGAGGGTCTTCACGA 44327
|| ||||||||||| ||||
Sbjct 15396 CCAGTGAGGGTCTTGACGA 15414
>seq301
Length=43884
Score = 141 bits (156), Expect = 7e-29
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || |||||||| || || |||||| ||||||||||| |||| |
Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || ||||||||||| || || |||||||| |||||||| || | ||
Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| || ||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 7685
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || |||||||| |||||||||||||| ||||| || |||||
Sbjct 7686 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734
>seq23
Length=158060
Score = 113 bits (124), Expect = 3e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| || ||| | || || |||||||| || |||||||
Sbjct 67394 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 67453
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 67454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 67513
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| ||| || ||||| | || || ||||| ||||| |||||||||||
Sbjct 67514 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 67571
Query 44326 GAA 44328
|||
Sbjct 67572 GAA 67574
>seq61
Length=119690
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199
||||||| ||| ||||||||||| ||| | || || || ||| ||||||||||| ||
Sbjct 2954 GTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACT-GTCTTCCAGCTGCTTACC 2896
Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259
|| ||||||| |||||||| || | | | || || || ||| ||||| |||
Sbjct 2895 AGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTT 2836
Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319
| | | |||||||||| |||||||||| | || || ||||| || |||| |||
Sbjct 2835 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGT 2776
Query 44320 CTTCACGAAGATTTGCAT 44337
||| ||||| || || ||
Sbjct 2775 CTTGACGAAAATCTGTAT 2758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359983503033924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |