Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq330 156 1e-32
seq301 150 4e-31
seq23 131 4e-25
seq61 122 2e-22
>seq330
Length=39978
Score = 156 bits (172), Expect = 1e-32
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| ||||| || ||||||||||||||||| || || |||||||
Sbjct 15414 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 15355
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| |||||||| || || |||||||| |||||||| ||||| |
Sbjct 15354 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGACTGA 15295
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || || ||||| || ||||| | || || |||| || ||| |||| || |
Sbjct 15294 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 15235
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || |||||
Sbjct 15234 AGTCCACTCTCCACCTTGT 15216
Score = 145 bits (160), Expect = 2e-29
Identities = 158/206 (77%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || || || || |||||||||||||||||| || |||
Sbjct 14965 CAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCCGAC 14906
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 14905 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 14846
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || || || ||||| ||||| || | || |||| ||| || ||| |
Sbjct 14845 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCAC-CTTGAGCGACTACAACAT 14787
Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128
||| || || |||||||| ||||
Sbjct 14786 CCAGAAGGAGAGCACACTGCA-CTTG 14762
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || |||||||||||||| || || ||
Sbjct 15707 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAT 15648
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| ||||| || ||||| || ||||| ||||||||
Sbjct 15647 ACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAG 15588
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || || ||||| ||||| | ||||| |||| || ||| ||
Sbjct 15587 CGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 15528
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 15527 CAGAAGGAGTCCACCCTCCACCTGGT 15502
Score = 123 bits (136), Expect = 6e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| | ||||| ||| ||||||
Sbjct 15193 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCAGAC 15134
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || |||||| ||||||||||||||| || || || || ||||| |||||
Sbjct 15133 ACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAG 15074
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| |||||||| || || || ||||| || || || | || |||| ||| || ||| |
Sbjct 15073 CGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCAC-CTTGAGCGACTACAACAT 15015
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || ||||| || |||||
Sbjct 15014 CCAGAAGGAGAGCACACTTCACCTTGT 14988
>seq301
Length=43884
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 7731 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 7672
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || |||||||||||
Sbjct 7671 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 7612
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||| || || ||||| || ||||| | ||||| |||| || ||| ||
Sbjct 7611 CGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAACATC 7552
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 7551 CAGAAGGAGTCTACCCTCCACCTGGT 7526
>seq23
Length=158060
Score = 131 bits (144), Expect = 4e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||| ||||| || ||| ||||| ||
Sbjct 67575 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 67516
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || ||||||||||| ||| |
Sbjct 67515 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 67456
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || |||||||| ||||| | || ||| |||| || ||| |||| ||
Sbjct 67455 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAA 67396
>seq61
Length=119690
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || |||| || || || ||||||||| |||||||| || |||
Sbjct 2761 CAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 2820
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||||||||||||||| || || | || ||||||||
Sbjct 2821 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCAGCAG 2880
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
|| | |||| ||| || || ||||| |||||
Sbjct 2881 CGCTTGATCTACGCTGGTAAGCAGCTGGAAGA 2912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203706955348968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |