Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq330 156 1e-32 seq301 150 4e-31 seq23 131 4e-25 seq61 122 2e-22 >seq330 Length=39978 Score = 156 bits (172), Expect = 1e-32 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| ||||| || ||||||||||||||||| || || ||||||| Sbjct 15414 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 15355 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || |||||||| |||||||| ||||| | Sbjct 15354 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGACTGA 15295 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || ||||| | || || |||| || ||| |||| || | Sbjct 15294 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 15235 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || || ||||| Sbjct 15234 AGTCCACTCTCCACCTTGT 15216 Score = 145 bits (160), Expect = 2e-29 Identities = 158/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || |||||||||||||||||| || ||| Sbjct 14965 CAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCCGAC 14906 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 14905 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 14846 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||||| ||||| || | || |||| ||| || ||| | Sbjct 14845 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCAC-CTTGAGCGACTACAACAT 14787 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || |||||||| |||| Sbjct 14786 CCAGAAGGAGAGCACACTGCA-CTTG 14762 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || || || Sbjct 15707 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAT 15648 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 15647 ACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAG 15588 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || || ||||| ||||| | ||||| |||| || ||| || Sbjct 15587 CGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 15528 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 15527 CAGAAGGAGTCCACCCTCCACCTGGT 15502 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| | ||||| ||| |||||| Sbjct 15193 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCAGAC 15134 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||||||| || || || || ||||| ||||| Sbjct 15133 ACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAG 15074 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||||| || || || | || |||| ||| || ||| | Sbjct 15073 CGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCAC-CTTGAGCGACTACAACAT 15015 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || ||||| || ||||| Sbjct 15014 CCAGAAGGAGAGCACACTTCACCTTGT 14988 >seq301 Length=43884 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 7731 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 7672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || ||||||||||| Sbjct 7671 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 7612 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || ||||| | ||||| |||| || ||| || Sbjct 7611 CGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAACATC 7552 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 7551 CAGAAGGAGTCTACCCTCCACCTGGT 7526 >seq23 Length=158060 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||| ||||| || ||| ||||| || Sbjct 67575 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 67516 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || ||||||||||| ||| | Sbjct 67515 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 67456 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || |||||||| ||||| | || ||| |||| || ||| |||| || Sbjct 67455 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAA 67396 >seq61 Length=119690 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || |||| || || || ||||||||| |||||||| || ||| Sbjct 2761 CAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 2820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||||||||| || || | || |||||||| Sbjct 2821 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCAGCAG 2880 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || | |||| ||| || || ||||| ||||| Sbjct 2881 CGCTTGATCTACGCTGGTAAGCAGCTGGAAGA 2912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203706955348968