Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1011 131 4e-25 >seq1011 Length=119094 Score = 131 bits (144), Expect = 4e-25 Identities = 273/404 (68%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| |||| | |||||||| || | || |||||| ||| Sbjct 29415 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCA 29474 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGA 230356 || ||| ||||||||||| || | || | | || || | || | ||| ||| Sbjct 29475 TCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGA 29534 Query 230357 ACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 || || | || ||| | || | ||||| || || || || || || || Sbjct 29535 ACCGTGCCAGCAAG-GAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAG 29593 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 || ||| | || ||| | || || ||| | ||||||||| | | || ||| Sbjct 29594 GAATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAG 29653 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| || || |||||||| | |||| || || || ||||||| | ||| Sbjct 29654 CAGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTAC 29713 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 || ||| |||||||||| || |||||| |||||| || || |||||||||||| Sbjct 29714 AAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTC 29773 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 || || ||||||||| ||||| |||| | ||||||| ||||| Sbjct 29774 TTTGAGAAGCGTGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 29817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809714748020