Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1011 132 5e-26 >seq1011 Length=119094 Score = 132 bits (146), Expect = 5e-26 Identities = 572/888 (64%), Gaps = 31/888 (3%) Strand=Plus/Minus Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711 |||| |||| || || || |||| |||| ||| || || || || || ||||| || Sbjct 29819 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTC 29764 Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769 ||||| | ||||| || ||||||||||| ||||| || || | || || | || || Sbjct 29763 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTC 29704 Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829 | | | || || || | | | | || || ||||| || || || || ||| | Sbjct 29703 TCG--TTGCCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCA 29646 Query 16830 ATTCGCAGTTCATTCCTATAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888 | | ||||||| || | || || | ||| |||| || ||||| ||| ||||| Sbjct 29645 GGTTGGAGTTCATGCCGAGCAGGGCGCAGGGGA-GAGCCTCGGTCAAGAATTCCTGCTCA 29587 Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944 || || || || | || || || | || ||| || || | ||||| || Sbjct 29586 ATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCACGGTTCTTG--- 29530 Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 || || || ||| || || || || || | |||||||| | ||| || Sbjct 29529 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAG 29471 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 ||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | ||| Sbjct 29470 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 29411 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || | || ||||| ||||||||||||| ||||| || | | || | ||| | Sbjct 29410 AAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA 29351 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAAT 17183 | | || |||| | ||||| || |||| ||||| || |||| |||||| Sbjct 29350 GGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGA-ATGCAAG 29292 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 || || || ||||| || || | | || | |||| || | || || || Sbjct 29291 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 29233 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| ||| ||| | |||||||| ||||||||||| ||||| || ||||| Sbjct 29232 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 29173 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 |||||||| || || | || || || || || ||| || || | || || ||||| Sbjct 29172 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 29113 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || ||||| || || |||| || || ||||| || || ||||| Sbjct 29112 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 29053 Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476 | || ||| |||||| | | ||| ||||| | ||| | ||||||| | Sbjct 29052 TCGTTCAG---GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 28996 Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524 ||||| || ||| | ||||| || ||||| | ||| || | |||| Sbjct 28995 GTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTAATTG 28948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517538781336720