Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 132 5e-26
>seq1011
Length=119094
Score = 132 bits (146), Expect = 5e-26
Identities = 572/888 (64%), Gaps = 31/888 (3%)
Strand=Plus/Minus
Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711
|||| |||| || || || |||| |||| ||| || || || || || ||||| ||
Sbjct 29819 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTC 29764
Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769
||||| | ||||| || ||||||||||| ||||| || || | || || | || ||
Sbjct 29763 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTC 29704
Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829
| | | || || || | | | | || || ||||| || || || || ||| |
Sbjct 29703 TCG--TTGCCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCA 29646
Query 16830 ATTCGCAGTTCATTCCTATAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888
| | ||||||| || | || || | ||| |||| || ||||| ||| |||||
Sbjct 29645 GGTTGGAGTTCATGCCGAGCAGGGCGCAGGGGA-GAGCCTCGGTCAAGAATTCCTGCTCA 29587
Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944
|| || || || | || || || | || ||| || || | ||||| ||
Sbjct 29586 ATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCACGGTTCTTG--- 29530
Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004
|| || || ||| || || || || || | |||||||| | ||| ||
Sbjct 29529 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAG 29471
Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064
||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | |||
Sbjct 29470 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 29411
Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124
|| | || ||||| ||||||||||||| ||||| || | | || | ||| |
Sbjct 29410 AAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA 29351
Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAAT 17183
| | || |||| | ||||| || |||| ||||| || |||| ||||||
Sbjct 29350 GGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGA-ATGCAAG 29292
Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242
|| || || ||||| || || | | || | |||| || | || || ||
Sbjct 29291 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 29233
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|||||||| ||| ||| | |||||||| ||||||||||| ||||| || |||||
Sbjct 29232 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 29173
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362
|||||||| || || | || || || || || ||| || || | || || |||||
Sbjct 29172 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 29113
Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422
|| ||||| || ||||| || || |||| || || ||||| || || |||||
Sbjct 29112 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 29053
Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476
| || ||| |||||| | | ||| ||||| | ||| | ||||||| |
Sbjct 29052 TCGTTCAG---GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 28996
Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524
||||| || ||| | ||||| || ||||| | ||| || | ||||
Sbjct 28995 GTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTAATTG 28948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517538781336720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |