Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1011 132 6e-26 >seq1011 Length=119094 Score = 132 bits (146), Expect = 6e-26 Identities = 358/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | | || | ||||||||||| || || || ||||| || || Sbjct 29497 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 29438 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 29437 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 29378 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 24325 |||||||||| || | | || || | |||| || |||||||| || Sbjct 29377 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 29318 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| ||||||||||| | ||||| || ||||| || || || ||||| ||| | Sbjct 29317 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 29258 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | | | || || | || || || || | || || | || || || ||||| Sbjct 29257 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 29198 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || || || || || |||||||| |||| |||||||| ||||| || || | Sbjct 29197 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 29138 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 29137 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 29078 Query 24566 ATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTT 24621 || || || || || ||||| | || | | | || ||||| || | | ||| | Sbjct 29077 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGATCCT 29019 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | || | ||| | ||||| | ||||| || || ||||| ||||| || ||||| | || Sbjct 29018 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCC 28959 Query 24682 AGAT 24685 |||| Sbjct 28958 AGAT 28955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713777717920