Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq155 206 3e-48 >seq155 Length=71478 Score = 206 bits (228), Expect = 3e-48 Identities = 519/795 (65%), Gaps = 68/795 (9%) Strand=Plus/Minus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 |||||| | ||| | |||||| || | |||||||| |||||||| | | | ||||| Sbjct 19387 TTAGACGGACATGTTCATGGGAATCGATTTGTGGGGGTCGTAGCCCTTGACCACGAAGTC 19328 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCTGGGAA 145651 ||| || | || |||| ||| | || ||| ||| | ||| ||| ||| | Sbjct 19327 CTCGACCTTCCAGCCATCGATG-CTGCCGCCCTTCTCCCGCGTAATCTCCAGCTCGGGGA 19269 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | ||||| || ||| | || || || || || | || | ||||| || ||||||| Sbjct 19268 ATGGCCGAGG-CTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTAGACG 19210 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 || ||||| |||| ||||||| ||| | |||||| | || | | ||| |||| | Sbjct 19209 TGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGCGAGC 19150 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 |||| || ||||| | |||||||| ||||||||||| | || || |||||||| | Sbjct 19149 ATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTCACAA 19090 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCT--CCC--------------------------- 145861 || |||||||| ||||||||| ||| | ||| Sbjct 19089 GACCGCTGGTATAGCTGGCAGTGGAGGTGGCCCTTTGGCTTGTTCTCTTCCGTGGGTTCT 19030 Query 145862 ----CGCC--CGCCACGT----------------------AGAACTGGCACAGGAGGTGG 145893 |||| |||| ||| |||||||| | | |||| Sbjct 19029 GCGGCGCCAACGCCCCGTCCGCGTCCAGGGTACGAGACGTAGAACTGGGCAAACATGTGG 18970 Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTC 145953 |||||||||||||||||| | ||| ||| ||||||||| |||||| | ||| Sbjct 18969 CAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGATTCCAGGCGCTGAGGATCATTCTC 18910 Query 145954 CTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGC 146013 | | | || || | | || || | || |||||||| ||||||| Sbjct 18909 CGGTCGTAAGGATTGTTGCGAAGCTTGTGGATGATCTCGGCCAGCTGGTCGACGCCCTTG 18850 Query 146014 CCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCG 146073 || ||| || | ||| | |||||||||| |||| || ||||||| |||||| |||||| Sbjct 18849 CCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCACTGAAACCCG 18790 Query 146074 TAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133 |||||||| |||||||| ||| ||| | ||| ||| ||| | | | ||||||| || Sbjct 18789 TAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCGAGGAACTCG 18730 Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTCCG 146191 |||||||| ||| |||||||||||||||| || ||||| ||| | | |||| | Sbjct 18729 CGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTTGAGGG--CGAGGGAGGATG 18672 Query 146192 TGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGG 146251 || ||| |||||||||||| ||||| ||| ||| | | |||||||| || | Sbjct 18671 TGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAGACCCGTTTTG 18612 Query 146252 TGGTCAGCAGGGGGA 146266 | || ||||| |||| Sbjct 18611 TTGTGAGCAGAGGGA 18597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069025738160