Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq378 113 4e-20
seq434 96.9 3e-15
>seq378
Length=193057
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | ||||||||||| || ||||| ||||| | |
Sbjct 156125 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 156066
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| || | ||||| || || ||||| || |||| || | ||||||||| ||
Sbjct 156065 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156006
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | ||| ||||| | |||
Sbjct 156005 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 155946
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||||||||| | || ||||| || ||||||||
Sbjct 155945 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
>seq434
Length=177494
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | || |||||||| || ||||| ||||| |
Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| || | ||||||||||| || || || | || | || |||||||||| |||
Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | ||||
Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69465
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| || ||||| || || | || ||||| || || ||||| |||
Sbjct 69466 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 69516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422253775816664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |