Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq378 129 5e-25 seq434 111 1e-19 seq422 91.5 1e-13 >seq378 Length=193057 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||| || ||||||| Sbjct 156107 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 156048 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| | || ||||||||||| || ||||| |||||||||||||| Sbjct 156047 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 155988 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||||| ||| | || ||| Sbjct 155987 ATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 155928 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| || || || || || || ||||||| Sbjct 155927 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 155897 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || ||||||||||| ||||||| |||||| ||||| ||||| || ||||| | Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| |||||||||||||| ||||| || ||||||||||| ||| ||| || || | Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATT 156485 Query 118667 TTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| | || | || ||||| | || | || |||||||||| || || | Sbjct 156484 GTCGATGGTGTCTGATGAT-TCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 156425 CGAAGATCTGCAT 156413 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| ||| || ||||||||||| ||||||| ||||| || || Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 156790 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | |||||||| || ||||| |||||||||||||| | Sbjct 156789 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 156730 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | || ||||||| ||| | || ||| Sbjct 156729 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTG 156670 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || ||||| ||||| Sbjct 156669 CCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq434 Length=177494 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| | || || |||||| Sbjct 69304 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 69363 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| | |||||||| || || || |||||||||||||| Sbjct 69364 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 69423 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 69424 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 69483 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 69484 CCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq422 Length=18081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || ||||| |||| Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||| | ||| | || ||||| ||||| || || || ||| Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824827177368