Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq378 129 5e-25
seq434 111 1e-19
seq422 91.5 1e-13
>seq378
Length=193057
Score = 129 bits (142), Expect = 5e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||| || ||| || |||||||
Sbjct 156107 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 156048
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || |||||| | || ||||||||||| || ||||| ||||||||||||||
Sbjct 156047 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 155988
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||||| ||| | || |||
Sbjct 155987 ATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 155928
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740
||||| || || || || || || |||||||
Sbjct 155927 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 155897
Score = 129 bits (142), Expect = 5e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || ||||||||||| ||||||| |||||| ||||| ||||| || ||||| |
Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
||| |||||||||||||| ||||| || ||||||||||| ||| ||| || || |
Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATT 156485
Query 118667 TTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725
|||| |||||| | || | || ||||| | || | || |||||||||| || || |
Sbjct 156484 GTCGATGGTGTCTGATGAT-TCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426
Query 118726 CAAAAATCTGCAT 118738
| || ||||||||
Sbjct 156425 CGAAGATCTGCAT 156413
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | ||| ||| || ||||||||||| ||||||| ||||| || ||
Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 156790
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| | |||||||| || ||||| |||||||||||||| |
Sbjct 156789 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 156730
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | || ||||||| ||| | || |||
Sbjct 156729 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTG 156670
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||||||| || || ||||| |||||
Sbjct 156669 CCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
>seq434
Length=177494
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| |||||||| || || |||||||| ||| | || || ||||||
Sbjct 69304 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 69363
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| |||| | |||||||| || || || ||||||||||||||
Sbjct 69364 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 69423
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 69424 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 69483
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||||||||
Sbjct 69484 CCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
>seq422
Length=18081
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| |||||||||||| || ||||| ||||
Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || || || |||||||||||||| || || || || | |||
Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||| | ||| | || ||||| ||||| || || || |||
Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 4221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433824827177368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |