Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq378 125 5e-24
seq434 114 8e-21
seq422 98.7 6e-16
>seq378
Length=193057
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| ||||||||||||||||| ||| | ||
Sbjct 156110 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 156051
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||||| |||||||| || ||||||||||| || | || |||||||||
Sbjct 156050 TCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 155991
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||||| || ||||| || | ||||||||
Sbjct 155990 TGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTC 155931
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || ||||| |||||
Sbjct 155930 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | ||| |||| ||| | || || || ||||| |||||||||||| |
Sbjct 156867 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156808
Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| | || || |||| |||| |||||| || || || || | ||||||||||| ||
Sbjct 156807 AAGGTG-CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 156749
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | | | | || | |||| ||||| ||
Sbjct 156748 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 156689
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || |||||||| ||||| || || || || |||||
Sbjct 156688 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | || || || ||||| |||||||||||| || || ||||
Sbjct 156624 AGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCC 156565
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || || || || |||||||| || || | | |||||||||
Sbjct 156564 TCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC 156505
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | | || | || | ||||| || |||| ||||||||
Sbjct 156504 TGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTC 156445
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| | || || || |||||||||||
Sbjct 156444 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413
>seq434
Length=177494
Score = 114 bits (126), Expect = 8e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||||||| | ||| || ||||| ||||||||||||||
Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||| || ||||| || | ||||||||||| |||
Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69465
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || ||||| || || || || |||||||||
Sbjct 69466 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 69513
>seq422
Length=18081
Score = 98.7 bits (108), Expect = 6e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | ||||||||| || || ||
Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| ||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| |||| || ||||| || | |||||||| ||||| || || || ||||| ||
Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323067849938240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |