Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq160 114 3e-20 >seq160 Length=70483 Score = 114 bits (126), Expect = 3e-20 Identities = 282/423 (67%), Gaps = 11/423 (3%) Strand=Plus/Minus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| | | |||| | | | ||| ||| ||| |||| ||||| ||| || | Sbjct 50235 GTCATGCGGCACAAGGAGGAGCTC---GACTCCGCCATTGTCTACGATCGAGACTTCAAC 50179 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||| | ||||| || ||||| ||| || ||||| || ||||||||||| Sbjct 50178 TACCAATACTTCGGCTTCAAGACTTTGGAGCGATCATACCTCCTGAAGCTTGATGGCAAG 50119 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 || || || ||| ||||||||| | ||||||||| |||| || || |||||| Sbjct 50118 ATTGTTGAGCGACCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGAC 50059 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT-GAACGCTGGATGACACATGCCAC 248996 || ||| | || || ||||| |||| | ||| | | | | | | || |||||| | Sbjct 50058 ATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAG-TTCTTCACCCATGCCTC 50000 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || || || ||||||||||||||| | |||||| ||| ||||| | | | Sbjct 49999 CCCCACCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGA 49940 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGAT 249113 |||| | || ||| |||| || || |||||||| || | ||||| || | ||| Sbjct 49939 CATGAAGGATGACAGCATCGAGGGTATCTATGACACTCTGA---AGACGTGTGCCATGAT 49883 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 ||| || | || || || ||||| | |||| | |||||| || | || || || Sbjct 49882 TTCCAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTA 49823 Query 249174 CAT 249176 ||| Sbjct 49822 CAT 49820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073751899455872