Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq378 156 3e-33
seq434 111 1e-19
>seq378
Length=193057
Score = 156 bits (172), Expect = 3e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| ||||||||||||||||||||||||||| ||| |||| |||| |||
Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 156790
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || ||||| ||||| ||||| ||||| | |||||||||||| |
Sbjct 156789 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 156730
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | |||||||| | ||| || ||||||
Sbjct 156729 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTG 156670
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||||||||| || || ||||||||
Sbjct 156669 CCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||||||||||||||||||||||||||| ||| |||| |||| || || ||
Sbjct 156616 GTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTG 156557
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | ||||| || || ||||| | ||||||||||||| ||| ||
Sbjct 156556 CTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTT 156497
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
| ||| || | | | |||| || ||||||| || || |||||||| ||
Sbjct 156496 TGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGT 156437
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || ||||| |||||
Sbjct 156436 CAACGTCTTGACGAAGATCTGCAT 156413
Score = 111 bits (122), Expect = 1e-19
Identities = 155/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184
|||| ||| || ||| ||||||||| |||||||||||| ||| | ||| ||| |||
Sbjct 156107 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 156048
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| || || ||||| |||| ||||| ||||| ||||| | ||||||||||||
Sbjct 156047 ---AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 155991
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||| || | | | | || | ||| ||||| | ||| || |||
Sbjct 155990 TGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTC 155931
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| || || ||||| || |||||||||||| ||
Sbjct 155930 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTG 155895
>seq434
Length=177494
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || || | || |||
Sbjct 69304 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 69363
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| ||||| || || | ||||||||||||
Sbjct 69364 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 69423
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 69424 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 69483
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || ||||| ||||||
Sbjct 69484 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 69519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395070125012134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |