Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq160 369 3e-97
seq1011 224 9e-54
seq378 129 5e-25
seq434 93.3 4e-14
>seq160
Length=70483
Score = 369 bits (408), Expect = 3e-97
Identities = 1140/1746 (65%), Gaps = 38/1746 (2%)
Strand=Plus/Plus
Query 22247 GACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCAT 22305
||||| |||||| || || || || ||||| || ||||| | | |||| | |||
Sbjct 48482 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CAATTTGGCGCTG 48540
Query 22306 CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT 22365
|| || ||||| ||||||||||| || | |||| ||| || || ||| |
Sbjct 48541 AGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATGTTGGGGATGTT 48600
Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425
||| | ||| ||||| | ||||| || || || | |||| ||| | ||| |
Sbjct 48601 CTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGT 48660
Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485
| || || || |||| || |||| || || || |||||||||| | ||| ||
Sbjct 48661 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 48720
Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545
|| ||||| |||||||| ||| | || ||||| | || ||||| ||||| ||||| |
Sbjct 48721 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 48780
Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAA 22603
|| || || ||||| || || | || | ||| | | ||||||| ||||
Sbjct 48781 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA- 48839
Query 22604 ATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662
| | ||| |||||| ||| |||||||| || || ||| | |||| |||||||
Sbjct 48840 --TCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGCTTGACAT---CCCACAT 48894
Query 22663 ATCGTATTGCAACACGCCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCA 22720
||| |||| | | ||| || | || || | | |||| | | | ||| || |||||
Sbjct 48895 GTCGAATTGGAGGATGCCCTCGGAT-GCAGGTGATCCCTT-GAATGATTCATAGGGACCC 48952
Query 22721 TATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATT 22780
| | | ||| | || ||||| | || ||| || || ||||| |||||
Sbjct 48953 TCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTAGATTGTCTCAAAGATC 49012
Query 22781 TTCTTGTTCAATTCG---GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC 22837
| |||||||| || || ||| || || | | ||||| |||| | |||
Sbjct 49013 TGCTTGTTCAGCTCACGAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGAGCAAGGAAA 49069
Query 22838 GCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT 22897
||||| || | |||||| || || | ||| || ||||||| || || || ||
Sbjct 49070 GCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTG----CTGTT 49125
Query 22898 GC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953
|| ||| | | ||| || || ||| || | |||| | ||| | | ||
Sbjct 49126 GCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAAC 49185
Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAA 23009
| || || | | ||||||||| ||| || ||||| | |||
Sbjct 49186 CACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG-TTGTAGTCGACAT 49244
Query 23010 ACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACT 23069
| || ||| | ||||| || ||||| || || ||||||||| || |||||
Sbjct 49245 AAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACT 49304
Query 23070 CTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129
| | || ||||| || || ||| | || || |||| || |||||||||| |
Sbjct 49305 CGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCT 49364
Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189
| || ||||| | |||||||||||||||| | || | || |||||| ||| | ||| |
Sbjct 49365 TGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCA 49424
Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTC 23247
||| | ||||| |||||||| ||| ||| || || | ||| |||| ||
Sbjct 49425 AGATGGAATACCACAGCTTCTGAGCGCGAATG-GTCTTGCGGCCACGTCCCTCCTTC-TC 49482
Query 23248 GTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTG 23307
|||||| | ||||| || || || || | || || ||||| || ||||| || |||
Sbjct 49483 GTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTC 49542
Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367
| || |||||||| |||| ||| || ||||| || |||| || ||||| ||
Sbjct 49543 GTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGG 49602
Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427
||||| ||||| ||||| || || ||||| ||||| || |||||| ||||||
Sbjct 49603 AATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG 49662
Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487
| ||| | || || || ||||| || ||||| ||||||||||| | |||||| || ||
Sbjct 49663 GAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 49722
Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547
|| | ||| || || ||||||||||| || | ||| ||||||||| |||||| |||||
Sbjct 49723 AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCAT 49782
Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607
|| | | |||||| || | ||| ||| || | || || | || || |
Sbjct 49783 GGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGAT 49842
Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667
| ||| |||| || || || || || || || || ||||| || || |||||
Sbjct 49843 GCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAG 49902
Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727
|||||| ||||| |||||||||||||| || || | |||||||||| || || ||||
Sbjct 49903 AGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAG 49962
Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787
|| || | || ||| |||| |||||| || ||| ||| || || ||| | |
Sbjct 49963 CTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 50022
Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847
||||| || ||||| || || | | | |||||||| ||||| ||||| | |
Sbjct 50023 AGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATACCAACAGA 50082
Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907
|| ||||| ||||||| || |||| ||| || | ||| | || || | || ||
Sbjct 50083 CACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGGAGGTA 50142
Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967
||| || | || || || || || || || | ||||| ||||| ||||||| || ||
Sbjct 50143 TGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 50202
Query 23968 GGCCGA 23973
||| ||
Sbjct 50203 GGCGGA 50208
>seq1011
Length=119094
Score = 224 bits (248), Expect = 9e-54
Identities = 495/733 (68%), Gaps = 23/733 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||||| |||||| | || |||
Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683
|| ||||||||| ||| ||| | || | || || ||| ||||| | || ||
Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 29071
Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743
||| | |||| || || ||||| || ||||| ||||| |||||||| |||||||
Sbjct 29072 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 29131
Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803
| || || || || | | ||||| ||||||| ||||| || || |
Sbjct 29132 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191
Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863
|| || ||| | || || || | || || || |||||||| || ||| | ||||| |||
Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251
Query 57864 GACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAA 57919
| || || || || |||||||| || || || || || || |||| |||||
Sbjct 29252 AGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGC-AAGAA 29307
Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979
||| || ||| | ||||| ||||| | | | | | || ||| || | || |
Sbjct 29308 GGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGT 29367
Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039
|| || ||||||||||| ||||| ||||| || |||||| | || || ||| |
Sbjct 29368 TGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCT 29427
Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099
||||| || || || ||||| || ||||| ||| ||||||| | || || || |||||
Sbjct 29428 CAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGA 29487
Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGAC 58156
|||||| || ||||| ||||| ||||| || |||||||| |||| || | | |
Sbjct 29488 GGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGTGCCAG 29544
Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216
||| ||| ||||| |||||||| || ||| || || | || || | ||
Sbjct 29545 CAAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604
Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276
||| || || || ||| ||||||| |||||| | ||||| ||||||| ||
Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGA 29664
Query 58277 GTTTGTTGCCGAC 58289
|||||||||||||
Sbjct 29665 GTTTGTTGCCGAC 29677
>seq378
Length=193057
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||||||||| ||||| || |||||| |||| || ||| | |||
Sbjct 156641 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 156700
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 156701 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 156760
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || || ||||| || ||| |||||||| | || ||||||| || |||
Sbjct 156761 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 156820
Query 31373 ATTCAAAAAGA 31383
||||| || ||
Sbjct 156821 ATTCAGAAGGA 156831
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| ||||| || ||||| | || |||||| | ||
Sbjct 156413 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 156472
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | ||||||||| || | || || || ||
Sbjct 156473 GACACCATCGACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATTCCTCCGGATCA 156531
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || || ||||| || ||| | || ||| | ||| ||||||| || ||
Sbjct 156532 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACTACAA 156591
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || ||||| || || ||
Sbjct 156592 CATTCAGAAGGAGAGCACACTTCACCTTGTCCT 156624
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 155898 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 155957
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | |||| | || || | || ||||||||| ||| | || || |||||
Sbjct 155958 CGATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 156017
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || ||||||||||| || | || || ||| || ||| || ||
Sbjct 156018 GCAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 156077
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || ||||| ||
Sbjct 156078 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 156110
>seq434
Length=177494
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 69515 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 69456
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 69455 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 69396
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| | || |||||||| || ||| |||| || || | ||| ||
Sbjct 69395 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 69336
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||| || || || || || || || ||||| || | ||| | || |||
Sbjct 69335 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 69285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445760527027680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |