Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq160 369 3e-97 seq1011 224 9e-54 seq378 129 5e-25 seq434 93.3 4e-14 >seq160 Length=70483 Score = 369 bits (408), Expect = 3e-97 Identities = 1140/1746 (65%), Gaps = 38/1746 (2%) Strand=Plus/Plus Query 22247 GACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCAT 22305 ||||| |||||| || || || || ||||| || ||||| | | |||| | ||| Sbjct 48482 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CAATTTGGCGCTG 48540 Query 22306 CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT 22365 || || ||||| ||||||||||| || | |||| ||| || || ||| | Sbjct 48541 AGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATGTTGGGGATGTT 48600 Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| | ||||| || || || | |||| ||| | ||| | Sbjct 48601 CTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGT 48660 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | || || || |||| || |||| || || || |||||||||| | ||| || Sbjct 48661 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 48720 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 || ||||| |||||||| ||| | || ||||| | || ||||| ||||| ||||| | Sbjct 48721 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 48780 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAA 22603 || || || ||||| || || | || | ||| | | ||||||| |||| Sbjct 48781 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA- 48839 Query 22604 ATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 | | ||| |||||| ||| |||||||| || || ||| | |||| ||||||| Sbjct 48840 --TCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGCTTGACAT---CCCACAT 48894 Query 22663 ATCGTATTGCAACACGCCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCA 22720 ||| |||| | | ||| || | || || | | |||| | | | ||| || ||||| Sbjct 48895 GTCGAATTGGAGGATGCCCTCGGAT-GCAGGTGATCCCTT-GAATGATTCATAGGGACCC 48952 Query 22721 TATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATT 22780 | | | ||| | || ||||| | || ||| || || ||||| ||||| Sbjct 48953 TCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTAGATTGTCTCAAAGATC 49012 Query 22781 TTCTTGTTCAATTCG---GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC 22837 | |||||||| || || ||| || || | | ||||| |||| | ||| Sbjct 49013 TGCTTGTTCAGCTCACGAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGAGCAAGGAAA 49069 Query 22838 GCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT 22897 ||||| || | |||||| || || | ||| || ||||||| || || || || Sbjct 49070 GCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTG----CTGTT 49125 Query 22898 GC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || ||| | | ||| || || ||| || | |||| | ||| | | || Sbjct 49126 GCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAAC 49185 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAA 23009 | || || | | ||||||||| ||| || ||||| | ||| Sbjct 49186 CACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG-TTGTAGTCGACAT 49244 Query 23010 ACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACT 23069 | || ||| | ||||| || ||||| || || ||||||||| || ||||| Sbjct 49245 AAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACT 49304 Query 23070 CTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129 | | || ||||| || || ||| | || || |||| || |||||||||| | Sbjct 49305 CGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCT 49364 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189 | || ||||| | |||||||||||||||| | || | || |||||| ||| | ||| | Sbjct 49365 TGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCA 49424 Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTC 23247 ||| | ||||| |||||||| ||| ||| || || | ||| |||| || Sbjct 49425 AGATGGAATACCACAGCTTCTGAGCGCGAATG-GTCTTGCGGCCACGTCCCTCCTTC-TC 49482 Query 23248 GTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTG 23307 |||||| | ||||| || || || || | || || ||||| || ||||| || ||| Sbjct 49483 GTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTC 49542 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 | || |||||||| |||| ||| || ||||| || |||| || ||||| || Sbjct 49543 GTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGG 49602 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 ||||| ||||| ||||| || || ||||| ||||| || |||||| |||||| Sbjct 49603 AATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG 49662 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | ||| | || || || ||||| || ||||| ||||||||||| | |||||| || || Sbjct 49663 GAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 49722 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | ||| || || ||||||||||| || | ||| ||||||||| |||||| ||||| Sbjct 49723 AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCAT 49782 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || | | |||||| || | ||| ||| || | || || | || || | Sbjct 49783 GGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGAT 49842 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| |||| || || || || || || || || ||||| || || ||||| Sbjct 49843 GCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAG 49902 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||| ||||| |||||||||||||| || || | |||||||||| || || |||| Sbjct 49903 AGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAG 49962 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || || | || ||| |||| |||||| || ||| ||| || || ||| | | Sbjct 49963 CTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 50022 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| || ||||| || || | | | |||||||| ||||| ||||| | | Sbjct 50023 AGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATACCAACAGA 50082 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||| ||||||| || |||| ||| || | ||| | || || | || || Sbjct 50083 CACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGGAGGTA 50142 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| || | || || || || || || || | ||||| ||||| ||||||| || || Sbjct 50143 TGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 50202 Query 23968 GGCCGA 23973 ||| || Sbjct 50203 GGCGGA 50208 >seq1011 Length=119094 Score = 224 bits (248), Expect = 9e-54 Identities = 495/733 (68%), Gaps = 23/733 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| |||||| | || ||| Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || ||||||||| ||| ||| | || | || || ||| ||||| | || || Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 29071 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || ||||| || ||||| ||||| |||||||| ||||||| Sbjct 29072 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 29131 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || || || || | | ||||| ||||||| ||||| || || | Sbjct 29132 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || |||||||| || ||| | ||||| ||| Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251 Query 57864 GACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAA 57919 | || || || || |||||||| || || || || || || |||| ||||| Sbjct 29252 AGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGC-AAGAA 29307 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 ||| || ||| | ||||| ||||| | | | | | || ||| || | || | Sbjct 29308 GGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGT 29367 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || ||||||||||| ||||| ||||| || |||||| | || || ||| | Sbjct 29368 TGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCT 29427 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || ||||| || ||||| ||| ||||||| | || || || ||||| Sbjct 29428 CAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGA 29487 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGAC 58156 |||||| || ||||| ||||| ||||| || |||||||| |||| || | | | Sbjct 29488 GGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGTGCCAG 29544 Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| ||| ||||| |||||||| || ||| || || | || || | || Sbjct 29545 CAAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || || || ||| ||||||| |||||| | ||||| ||||||| || Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGA 29664 Query 58277 GTTTGTTGCCGAC 58289 ||||||||||||| Sbjct 29665 GTTTGTTGCCGAC 29677 >seq378 Length=193057 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||||||||| ||||| || |||||| |||| || ||| | ||| Sbjct 156641 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 156700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 156701 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 156760 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| |||||||| | || ||||||| || ||| Sbjct 156761 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 156820 Query 31373 ATTCAAAAAGA 31383 ||||| || || Sbjct 156821 ATTCAGAAGGA 156831 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || |||||| | || Sbjct 156413 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 156472 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | || || || || Sbjct 156473 GACACCATCGACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATTCCTCCGGATCA 156531 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| | || ||| | ||| ||||||| || || Sbjct 156532 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACTACAA 156591 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || ||||| || || || Sbjct 156592 CATTCAGAAGGAGAGCACACTTCACCTTGTCCT 156624 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 155898 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 155957 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 155958 CGATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 156017 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 156018 GCAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 156077 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 156078 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 156110 >seq434 Length=177494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 69515 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 69456 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 69455 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 69396 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || || | ||| || Sbjct 69395 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 69336 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 69335 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 69285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760527027680