Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1011 149 1e-30 seq160 100 6e-16 >seq1011 Length=119094 Score = 149 bits (164), Expect = 1e-30 Identities = 299/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| || || ||||| |||||| Sbjct 29366 GTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 29425 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | ||| Sbjct 29426 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 29485 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || |||||||| ||| ||||| | | || ||| Sbjct 29486 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 29540 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || ||| | ||| || |||| || || ||||||||||| || ||||| Sbjct 29541 CCAGCAAG-GAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTC 29599 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || | | || ||||||| ||| |||||| |||||| Sbjct 29600 TTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTAC 29659 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 || || ||||| || || || | || | | || || ||| ||| || | Sbjct 29660 ATCGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCT 29719 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| |||||||| || ||||| |||| ||||||||||| ||||| Sbjct 29720 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAG 29779 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 29780 AAGCGTGTCGCCGACTACCA 29799 >seq160 Length=70483 Score = 100 bits (110), Expect = 6e-16 Identities = 412/642 (64%), Gaps = 12/642 (2%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || ||||| ||||| |||| ||||| ||||||| | ||| | |||||||||||| Sbjct 49480 CTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 49539 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAG-CCTTC---ACTCTCTCCATGAAGA 94522 |||| ||||||||| || | ||| ||| || |||| || | || |||||||| Sbjct 49540 TTCGTTGGGGCACATGAGCGTCCA----GTCCAAGTTCTTCTCAACACGCTTCATGAAGA 49595 Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582 |||| | | ||||| ||| |||| | || | | | | ||||| || ||| | Sbjct 49596 GATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGT 49655 Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642 |||| | | |||| || || ||||| ||||| | |||||||| Sbjct 49656 TCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAA 49715 Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702 || || | ||||| || ||||| || | | | ||| | ||| || | | Sbjct 49716 AGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTC 49775 Query 94703 GGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGAC-GAAATGGGGCTTCCTTTT 94761 | || | | || | ||| |||||| | || | | |||| || | Sbjct 49776 GAAGCATGGGAATAATACCGTTAGAGGTACC-GTTGGTGCCAGCAATGTAAGAGCCGGTG 49834 Query 94762 GCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCC 94821 || | | || | || | ||||| || ||||| ||||||| || || || | Sbjct 49835 GCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACAC 49894 Query 94822 TCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCAC 94881 ||| ||||| ||||| |||||||| ||||| ||||| | | | | | | |||||| Sbjct 49895 GTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCAT 49954 Query 94882 GAGGAAAGTTGGG-GTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAA 94940 ||||| || |||| || | || || || ||||| |||||||| |||||||| || Sbjct 49955 GAGGACAGCTGGGCCTGCG-GGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAA 50013 Query 94941 ATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAAT 95000 | | || |||||||| | ||||| || | |||| | ||||| ||| || Sbjct 50014 GAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGAT 50073 Query 95001 GCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || |||| ||| ||||| ||||||| ||| || |||||||| Sbjct 50074 ACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAAC 50115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989570636286570