Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1011 154 2e-32 seq160 132 6e-26 >seq1011 Length=119094 Score = 154 bits (170), Expect = 2e-32 Identities = 363/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||||||||||||| | | || | ||||| ||||| || || || ||||| || || Sbjct 29497 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 29438 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 29437 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 29378 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33772 |||||||||| || | || || || | |||| || |||||||| || Sbjct 29377 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 29318 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| ||||||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 29317 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 29258 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 29257 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 29198 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| |||| |||||||| ||||| || || | Sbjct 29197 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 29138 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | | || || || || || |||||| ||| ||||| || |||| | Sbjct 29137 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 29078 Query 34013 ATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || || || || || ||||| | || | | | || ||||| || | | ||| | Sbjct 29077 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGATCCT 29019 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | ||||| | ||||| || || ||||| ||||| || ||||| | || Sbjct 29018 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCC 28959 Query 34129 AGAT 34132 |||| Sbjct 28958 AGAT 28955 >seq160 Length=70483 Score = 132 bits (146), Expect = 6e-26 Identities = 449/693 (65%), Gaps = 6/693 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| ||||| | || ||||| | || ||| || || | || || || ||||| || Sbjct 49534 AGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAA 49593 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| |||||||| ||||| | || | || | | | || || || || Sbjct 49594 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTG 49653 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| ||||| |||||| | | | |||| ||||| || || | ||| ||||| Sbjct 49654 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGC 49713 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || |||||||| | ||||| || ||||| || | || Sbjct 49714 AAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACAC 49773 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || | ||| |||||||||||||| || |||| ||||| || | || || || | Sbjct 49774 TCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGT 49833 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | || | || || || || || ||||| || || || | || Sbjct 49834 GGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCA 49891 Query 63579 CATCGT-TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 || ||| || | ||||||||||| || || ||||| ||||| |||||| | | || Sbjct 49892 CA-CGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAA 49950 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 || |||| ||| | | || || || || || | ||| || || || || || Sbjct 49951 GCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGT 50010 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || | || ||| | || ||||| ||||| | | || || || | Sbjct 50011 GAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCA 50070 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 || || || | || ||||| | ||||||||| |||| |||||||| ||| | | Sbjct 50071 GATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 50130 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 |||| | ||| ||| |||||||| || || || || || | ||| |||||||| Sbjct 50131 CTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCG 50190 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||||| | ||| | || | ||||| ||||| Sbjct 50191 ATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 50223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809302153120