Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq378 132 5e-26 seq434 82.4 8e-11 >seq378 Length=193057 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| ||| ||||| | || ||| || |||||||| || ||| Sbjct 156870 TGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCG 156811 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||| ||||| ||||||||| |||||| || ||||| || ||| Sbjct 156810 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 156751 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | ||||||| | || Sbjct 156750 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 156692 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | ||| | ||||||||||||| || || ||||| ||||||||| Sbjct 156691 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 156640 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || ||||||| |||| ||| || ||||| ||||||||| | Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| ||||| |||||||| ||||| || || || ||||| ||| | |||| || | Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 156486 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | ||||| | | || ||||| | || | ||||||||||||||||| || | Sbjct 156485 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426 Query 139752 CGAATATTTGCATA 139765 |||| || |||||| Sbjct 156425 CGAAGATCTGCATA 156412 >seq434 Length=177494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | |||||||| || || ||||| || ||| | || | Sbjct 69298 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA 69357 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| |||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 69358 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 69417 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 69418 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 69477 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 69478 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057464356800