Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq378 132 5e-26
seq434 82.4 8e-11
>seq378
Length=193057
Score = 132 bits (146), Expect = 5e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||||| ||| ||||| | || ||| || |||||||| || |||
Sbjct 156870 TGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCG 156811
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| |||| |||||| ||||| ||||||||| |||||| || ||||| || |||
Sbjct 156810 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 156751
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713
|| ||||| || ||||| ||| | || | || | | || | ||||||| | ||
Sbjct 156750 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 156692
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| | ||| | ||||||||||||| || || ||||| |||||||||
Sbjct 156691 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 156640
Score = 113 bits (124), Expect = 4e-20
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || |||||||| || ||||||| |||| ||| || ||||| ||||||||| |
Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
||| ||||| |||||||| ||||| || || || ||||| ||| | |||| || |
Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 156486
Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751
| || | ||||| | | || ||||| | || | ||||||||||||||||| || |
Sbjct 156485 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426
Query 139752 CGAATATTTGCATA 139765
|||| || ||||||
Sbjct 156425 CGAAGATCTGCATA 156412
>seq434
Length=177494
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | |||||||| || || ||||| || ||| | || |
Sbjct 69298 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA 69357
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| |||||||| |||||| || ||||| || || || ||||| || |||
Sbjct 69358 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 69417
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| | |
Sbjct 69418 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 69477
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 69478 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496057464356800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |