Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1011 156 6e-33 seq160 141 1e-28 >seq1011 Length=119094 Score = 156 bits (172), Expect = 6e-33 Identities = 362/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||||||||| | | || || ||||||||||| || || || ||||| || || Sbjct 29497 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 29438 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 29437 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 29378 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCACTTTTGAGC 50150 |||||||||||| || | || || || | |||| || |||||||| || Sbjct 29377 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 29318 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| ||||||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 29317 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 29258 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 29257 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 29198 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || || ||||| || |||||||| |||| |||||||| ||||| || || | Sbjct 29197 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 29138 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 29137 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 29078 Query 50391 ATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAATCATTGATATCTTT 50447 || || || | || |||| | | | | || ||||| || | | ||| || Sbjct 29077 GTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTT 29018 Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 || | ||| | ||||| | ||||| || || ||||| ||||| || ||||| | ||| Sbjct 29017 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCA 28958 Query 50508 GAT 50510 ||| Sbjct 28957 GAT 28955 >seq160 Length=70483 Score = 141 bits (156), Expect = 1e-28 Identities = 452/695 (65%), Gaps = 6/695 (1%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| ||||||| || ||||| | || ||| || | | || || || ||||| Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 49591 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| |||||||| ||||| | || | || | | | ||| || || || Sbjct 49592 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCG 49651 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| |||||| | | | |||| ||||| || || | ||| ||| Sbjct 49652 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATG 49711 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 49712 GCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 49771 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| | ||| ||||||||||| || || ||||| ||||| || | || || || Sbjct 49772 ACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 49831 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 ||||||| || | || | || || || || || ||||| || || || | | Sbjct 49832 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGG 49889 Query 80249 CGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 | || ||| || | || |||||||| ||||| ||||| ||||| |||||| | | Sbjct 49890 CACA-CGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAG 49948 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 || || |||| ||| | || || || || || | ||| || || || || Sbjct 49949 AAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGG 50008 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || | || ||||| || ||||| ||||| | | || || || | Sbjct 50009 GTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCC 50068 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || || || | || ||||| | ||||||||| |||| ||||| |||||| || Sbjct 50069 CAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCA 50128 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | |||| | ||| ||| |||||||| || || || || || | ||| |||||| Sbjct 50129 AGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCT 50188 Query 80548 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 || ||||| | ||| | |||| ||| | ||||| Sbjct 50189 CGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 50223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259336808560