Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1011 132 6e-26 seq160 125 1e-23 >seq1011 Length=119094 Score = 132 bits (146), Expect = 6e-26 Identities = 357/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | ||||||||||| || || || ||||| || || Sbjct 29497 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 29438 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 29437 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 29378 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || || | |||| || |||||||| || Sbjct 29377 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 29318 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| ||||||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 29317 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 29258 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 29257 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 29198 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || ||||| || |||||||| |||| ||||||| | ||| || || | Sbjct 29197 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 29138 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | | || ||||| || || || ||| ||| ||||| || |||| | Sbjct 29137 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 29078 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551 || || || || || |||| | ||| | || ||||| || | | ||| | Sbjct 29077 GTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCT 29019 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | ||||| | ||||| || || || || ||||| || ||||| | || Sbjct 29018 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCC 28959 Query 42612 AGAT 42615 |||| Sbjct 28958 AGAT 28955 >seq160 Length=70483 Score = 125 bits (138), Expect = 1e-23 Identities = 451/697 (65%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 ||||| ||||| || || ||||| | | ||| || || || | | || || |||| Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTC--CAAGTTCTTCTCAACACGCTTCA 49589 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | |||||||| |||||||| ||||| | || | || | | | ||| || || | Sbjct 49590 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGC 49649 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||| ||||| |||||| | | | |||| ||||| || || | ||| | Sbjct 49650 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGA 49709 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || || || ||||| || |||||||| | ||||| || ||||| || Sbjct 49710 TGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGA 49769 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | |||| | ||| ||||||||||| || || | ||| ||||| || | || || | Sbjct 49770 ACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGC 49829 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || || || | || || || || || ||||| || || || | Sbjct 49830 CGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCAT 49887 Query 72330 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 || || ||| || | || |||||||| ||||| || || |||||| |||||| | | Sbjct 49888 GGCACA-CGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCA 49946 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 || || |||| ||| | || || || || || | ||| || || || | Sbjct 49947 AGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCAT 50006 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | || || | || ||||| || ||||| ||||| | | || || || | Sbjct 50007 GGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTC 50066 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || || | || ||||| | ||| ||||| |||| ||||| |||||| || Sbjct 50067 CCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCAT 50126 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | |||| | ||| ||| |||||||| || || || || || | ||| |||| Sbjct 50127 CAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGT 50186 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 |||| ||||| | ||| | || | ||| | ||||| Sbjct 50187 CTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 50223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130357741040