Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 279 8e-70
seq160 158 2e-33
>seq1011
Length=119094
Score = 279 bits (308), Expect = 8e-70
Identities = 580/851 (68%), Gaps = 37/851 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||||||||| ||||| | ||||||| | ||||||
Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134
|||||||| ||| |||| ||| | | || ||| || ||| ||||| || ||
Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 29070
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| |
Sbjct 29071 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 29130
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 29131 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 29189
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311
|||| |||||| | ||||| || | ||||| || || |||| ||||| | ||
Sbjct 29190 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 29249
Query 125312 TCCGCAA-CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
| || | || | || ||||| ||||| || || || | || | || || || |
Sbjct 29250 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 29306
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
|||| | |||| || ||||||| | ||| | || ||||| | ||| | | ||||
Sbjct 29307 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 29366
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || |||||||| ||||| |||||||| ||| ||||| ||||||| ||||
Sbjct 29367 TTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 29426
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || |||||||| || ||||| |||||| | || ||||| ||||
Sbjct 29427 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 29486
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610
|||| || ||| |||||||||| || ||| ||| | | | | || |
Sbjct 29487 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 29537
Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
| ||||| | | |||| ||| |||| | |||||||| || | || || || |
Sbjct 29538 GTGCCAGCAAGG---AGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGG 29594
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
| || | ||||| | || || | | || | |||||||||| ||| || |||
Sbjct 29595 AATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGC 29654
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784
||||||| |||||||| || || ||||| || || | ||| || ||||| |
Sbjct 29655 AGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCG---CTCTCGGCAACGAGAAGATCT 29711
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||| | || |||||||| |||||| | ||| || || | || ||||||||||
Sbjct 29712 ACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACT 29771
Query 125845 TTTTCGAGAAG 125855
| || ||||||
Sbjct 29772 TCTTTGAGAAG 29782
>seq160
Length=70483
Score = 158 bits (174), Expect = 2e-33
Identities = 331/486 (68%), Gaps = 8/486 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || || || || || | ||| ||||| | || || |||||||| |||
Sbjct 49743 CAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCTGAC 49684
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || | ||||| ||| ||| ||||||| || || | |||
Sbjct 49683 GTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGTGAC 49624
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053
||||| ||| |||||| | || ||| | ||||||||||| || | || |||
Sbjct 49623 TTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGG-- 49566
Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113
|||||| || ||||||||| || | || || || | || |||| ||||| ||||
Sbjct 49565 ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAGT 49506
Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCA 97172
| ||||| ||| | |||||| | ||||| || || |||| | ||| ||
Sbjct 49505 TCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAAGACCATTCG-CGCT 49447
Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231
| |||| |||||| | ||||| || ||| ||| |||||||| | || | ||| ||
Sbjct 49446 C-AGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCT 49388
Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291
|||||||||| || || ||||| |||||||| || |||| |||||| ||||
Sbjct 49387 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGCTC 49328
Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351
||| || ||||| || || | |||||| | || |||||| || |||||| ||
Sbjct 49327 CAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGCTGTTTGCAACCT 49268
Query 97352 GGCATC 97357
||| ||
Sbjct 49267 GGCCTC 49262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741049436545040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |