Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1011 279 8e-70 seq160 158 2e-33 >seq1011 Length=119094 Score = 279 bits (308), Expect = 8e-70 Identities = 580/851 (68%), Gaps = 37/851 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||| | ||||||| | |||||| Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| ||||| || || Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 29070 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| | Sbjct 29071 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 29130 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 29131 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 29189 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311 |||| |||||| | ||||| || | ||||| || || |||| ||||| | || Sbjct 29190 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 29249 Query 125312 TCCGCAA-CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | || | || | || ||||| ||||| || || || | || | || || || | Sbjct 29250 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 29306 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || ||||||| | ||| | || ||||| | ||| | | |||| Sbjct 29307 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 29366 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 29367 TTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 29426 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 29427 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 29486 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| |||||||||| || ||| ||| | | | | || | Sbjct 29487 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 29537 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | | |||| ||| |||| | |||||||| || | || || || | Sbjct 29538 GTGCCAGCAAGG---AGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGG 29594 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 | || | ||||| | || || | | || | |||||||||| ||| || ||| Sbjct 29595 AATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGC 29654 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| |||||||| || || ||||| || || | ||| || ||||| | Sbjct 29655 AGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCG---CTCTCGGCAACGAGAAGATCT 29711 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| | || |||||||| |||||| | ||| || || | || |||||||||| Sbjct 29712 ACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACT 29771 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 29772 TCTTTGAGAAG 29782 >seq160 Length=70483 Score = 158 bits (174), Expect = 2e-33 Identities = 331/486 (68%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 49743 CAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCTGAC 49684 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| ||| ||| ||||||| || || | ||| Sbjct 49683 GTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGTGAC 49624 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053 ||||| ||| |||||| | || ||| | ||||||||||| || | || ||| Sbjct 49623 TTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGG-- 49566 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||| || ||||||||| || | || || || | || |||| ||||| |||| Sbjct 49565 ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAGT 49506 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCA 97172 | ||||| ||| | |||||| | ||||| || || |||| | ||| || Sbjct 49505 TCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAAGACCATTCG-CGCT 49447 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| |||||| | ||||| || ||| ||| |||||||| | || | ||| || Sbjct 49446 C-AGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCT 49388 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| || || ||||| |||||||| || |||| |||||| |||| Sbjct 49387 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGCTC 49328 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 ||| || ||||| || || | |||||| | || |||||| || |||||| || Sbjct 49327 CAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGCTGTTTGCAACCT 49268 Query 97352 GGCATC 97357 ||| || Sbjct 49267 GGCCTC 49262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049436545040