Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq155 89.7 3e-13
>seq155
Length=71478
Score = 89.7 bits (98), Expect = 3e-13
Identities = 164/238 (69%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796
|||||| || || ||| | || | |||||| ||| | |||| |||||| || || ||
Sbjct 18868 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAA 18809
Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856
| || |||||| |||||||| || || || ||||| || | || | ||| | |||
Sbjct 18808 GTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCC 18749
Query 25857 CCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 25916
| || | || || | ||| |||||| ||||||||||||| || || ||||
Sbjct 18748 GACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTT 18689
Query 25917 GAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGC 25973
||| | |||| |||| ||||| || |||||| || ||||| || |||||||
Sbjct 18688 GAGGGCGAGGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 18632
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/207 (71%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447
||| || || | ||||| | ||| || || |||| || | || | ||| || | |||
Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214
Query 25448 GACGTGAGCGTCTCCCA-GA-GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505
|||||| |||||||||| || ||| || | || ||| || | || || |||| |
Sbjct 19213 GACGTGTGCGTCTCCCATGACGTG-GGTGAGGCT-TCCGGGCACCAGATCGCACACGTGA 19156
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| | ||||| ||||| ||| |||||||||||||| ||||| | |||| ||||||
Sbjct 19155 GCGAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATG 19096
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACA 25592
| | | |||| |||||| ||||| ||
Sbjct 19095 T-CACAAGACCGCTGGTATAGCTGGCA 19070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340133230719942
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |