Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq155 89.7 3e-13 >seq155 Length=71478 Score = 89.7 bits (98), Expect = 3e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796 |||||| || || ||| | || | |||||| ||| | |||| |||||| || || || Sbjct 18868 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAA 18809 Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856 | || |||||| |||||||| || || || ||||| || | || | ||| | ||| Sbjct 18808 GTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCC 18749 Query 25857 CCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 25916 | || | || || | ||| |||||| ||||||||||||| || || |||| Sbjct 18748 GACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTT 18689 Query 25917 GAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGC 25973 ||| | |||| |||| ||||| || |||||| || ||||| || ||||||| Sbjct 18688 GAGGGCGAGGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 18632 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 ||| || || | ||||| | ||| || || |||| || | || | ||| || | ||| Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214 Query 25448 GACGTGAGCGTCTCCCA-GA-GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 |||||| |||||||||| || ||| || | || ||| || | || || |||| | Sbjct 19213 GACGTGTGCGTCTCCCATGACGTG-GGTGAGGCT-TCCGGGCACCAGATCGCACACGTGA 19156 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | ||||| ||||| ||| |||||||||||||| ||||| | |||| |||||| Sbjct 19155 GCGAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATG 19096 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACA 25592 | | | |||| |||||| ||||| || Sbjct 19095 T-CACAAGACCGCTGGTATAGCTGGCA 19070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340133230719942