Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq378 105 6e-18 seq434 93.3 4e-14 >seq378 Length=193057 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||||||||||| ||||||||||| || ||| || ||||||| |||||| Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGC 156556 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || | ||||||||||||| || | || ||||||||| ||| || Sbjct 156555 TTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTT 156496 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | || || ||| | ||| ||||| || ||||| Sbjct 156495 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 156436 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 156435 AACGTCTTGACGAAGATCTGCAT 156413 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || |||||||||||||| ||||||||||| || ||| || |||| ||| Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 156790 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | | || || |||||||| || || | | ||||||||| | Sbjct 156789 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 156730 Query 48638 ATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || ||||| |||| ||| ||| ||||| || || || | Sbjct 156729 ATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCT 156672 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || || ||||| ||||| Sbjct 156671 TGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq434 Length=177494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | ||| | ||||||||||||||||| || | Sbjct 69321 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 69380 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 69381 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 69440 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||||| ||| | || || || || || ||||| || || || Sbjct 69441 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 69500 Query 48715 AAAAATCTGCATCGTGTCT 48733 |||||||||||| || || Sbjct 69501 GAAAATCTGCATCTTGCCT 69519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245788765054