Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq378 105 6e-18
seq434 93.3 4e-14
>seq378
Length=193057
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||||||||||||||| ||||||||||| || ||| || ||||||| ||||||
Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGC 156556
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| | | || | ||||||||||||| || | || ||||||||| ||| ||
Sbjct 156555 TTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTT 156496
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| || | || || ||| | ||| ||||| || |||||
Sbjct 156495 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 156436
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 156435 AACGTCTTGACGAAGATCTGCAT 156413
Score = 105 bits (116), Expect = 6e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || || |||||||||||||| ||||||||||| || ||| || |||| |||
Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 156790
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
||||||||||| | | || || |||||||| || || | | ||||||||| |
Sbjct 156789 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 156730
Query 48638 ATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||||| | | || ||||| |||| ||| ||| ||||| || || || |
Sbjct 156729 ATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCT 156672
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| ||||| || || ||||| |||||
Sbjct 156671 TGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
>seq434
Length=177494
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || | | ||| | ||||||||||||||||| || |
Sbjct 69321 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 69380
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| || |||||||| ||| || | | ||||||||| || || ||||| |
Sbjct 69381 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 69440
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| |||| ||||||| ||| | || || || || || ||||| || || ||
Sbjct 69441 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 69500
Query 48715 AAAAATCTGCATCGTGTCT 48733
|||||||||||| || ||
Sbjct 69501 GAAAATCTGCATCTTGCCT 69519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421245788765054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |