Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq944 107 3e-19 seq159 104 4e-18 >seq944 Length=330383 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| || |||| |||||| || ||||| || || || |||||||| ||||| Sbjct 7080 GCTAAGCGTCACCGAAAGAT-TCTTCGTGACAACATTCAGGGCATTACCAAGCCTGCTAT 7138 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 7139 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 7179 Score = 82.4 bits (90), Expect = 1e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | ||| ||||||| || ||| |||| |||| Sbjct 7261 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGTCCTTCCTCGAGGGCGTCATCCGCGATG 7320 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || |||||||||||||| |||| | ||||| | Sbjct 7321 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCGCTGGACGTTGTCTACG 7380 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || || || ||||| | | || ||||| || |||| Sbjct 7381 CTCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTA 7423 >seq159 Length=70598 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || || |||||||| ||||| Sbjct 49966 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCTAT 50024 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 50025 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 50065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074236320422