Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq160 356 6e-93 >seq160 Length=70483 Score = 356 bits (394), Expect = 6e-93 Identities = 1152/1759 (65%), Gaps = 66/1759 (4%) Strand=Plus/Minus Query 363434 ATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATT 363493 |||| | |||||||| || || ||||| ||| | ||||| || || |||||||| | Sbjct 50126 ATGGCAAGATTGTTGAGCGACCACAGCACATGATCATGCGAGTGTCTGTTGGTATC---T 50070 Query 363494 GCCCGGATG---TTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTA 363546 | |||| |||| | | || ||||| || || |||| || || | Sbjct 50069 GGGGAGATGACATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTA---GCAAGT-TC 50014 Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| | || || ||| ||| || || || | | | ||| |||| || Sbjct 50013 TTCACCCATGCCTCCCCCACCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCA 49954 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | | |||||||| || |||||||||||||| |||||| || |||| Sbjct 49953 TGCTTCTTGGTCGACATGAAGGATGACAGCATCGAGGGTATCTATGACACTCTGAAGACG 49894 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | |||||||||| || || || || || | | || ||||| | ||||| Sbjct 49893 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 49835 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| ||||| || ||| || || | |||||||||||| Sbjct 49834 CACCGG-CTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTC 49776 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | ||||| |||| ||||| || || ||||| |||||||| ||||| || || | Sbjct 49775 GAGTGTTCAACAACACTGCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCT 49716 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || |||||||| || || || | |||||||| ||||| ||||| || | Sbjct 49715 TTGCCATCTACCTCGAGCCCTGGCACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGA 49656 Query 363905 AC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 || |||| || |||||| | || || ||||| ||||| ||| || ||| || | | Sbjct 49655 ACCACGGCAAGGAAGAGG---TCCGCGCTCGTGACTTGTTCCTTGCTCTCTGGATTCCCG 49599 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAA--GAATTGGTCACTCTTTTGCCCACACGA 364019 | | || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| Sbjct 49598 ATCTCTTCATGAAGCGTGTTGAG--AAGAACTTGGACTGGACGCTCATGTGCCCCAACGA 49541 Query 364020 ATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 ||| || || ||| | || || ||||| | | || | | ||| | || || ||||| Sbjct 49540 ATGCCCTGGCCTTGCTGACTGCTATGGCGAG--GAGTTCGAGGCTTTGTATGAGAAGTAC 49483 Query 364078 GAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 || ||||||| | || ||||| |||| ||| |||||||| |||| | ||||| || Sbjct 49482 GAGAAGGAGGGACGTGGCCGCAAGACCATTCGCGCTCAGAAGCTGTGGTATTCCATCTTG 49423 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || | |||| ||||| || | |||| ||| | ||||| ||| | |||||||||||| Sbjct 49422 GAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAG 49363 Query 364198 TCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGA 364256 ||||||| || |||| || || | || |||| |||||| || |||||||| || || Sbjct 49362 AGCAACCAGAAGAACCTGGGAACCA-TCCGCAGCTCCAACCTCTGCACCGAGATCATCGA 49304 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT 364316 ||| || || |||||| ||| || || ||||| || || | || || || || | Sbjct 49303 GTACTGTGCCCCAGACGAGGTTGCTGTTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTA 49244 Query 364317 TGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 ||| || || || | ||| || | || |||| || | ||| || Sbjct 49243 TGTCGACTACAACGAAGGCTGCTACGACTTTAAGAAGCTCCATGAAGTTA-CTAAGGTGG 49185 Query 364371 TACT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429 | | |||| || ||||| | || || || | || || | | || ||| Sbjct 49184 TTGTCCGCAACCTTAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCA 49125 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 || ||||| || || || |||||| ||||||| ||||| || || |||| ||| Sbjct 49124 ACAGCAACATGCGCCACCGACCCATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCC 49065 Query 364490 TGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||||| ||| | ||||| || || || ||||||| || || ||| ||||||| Sbjct 49064 T--TGCTCTGCGCATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTT 49007 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGG-GAA 364606 ||| ||||| || || || | ||||| | ||| | |||||| | | Sbjct 49006 TGAGACAATCTACCACGCGGCCCTAGAGGCTTC------TATGGAGATCGCCAAGGTGGA 48953 Query 364607 AGTACTCTA-----CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCT 364661 | | ||| | | |||| || ||| || |||| | |||| || || | Sbjct 48952 GGGTCCCTATGAATCATTCAAGGGATCACCTGCATCCGAGGGCATCCTCCAATTCGACAT 48893 Query 364662 ATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGA 364720 ||| |||||| ||| |||| || ||| | ||||| |||| | | | | | ||| Sbjct 48892 GTGGGATGTCAAGCCCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGC-AGATCAAGG 48834 Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||| ||||| |||||| | | | || || ||||| || || ||| | |||| Sbjct 48833 AGCACGGTACGCGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGA 48774 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTC 364840 | || || ||||||||||||||||| || | || ||| | || || || || | Sbjct 48773 TTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCC 48714 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 || |||| || || | ||| || || | || ||||||| || |||| ||| | Sbjct 48713 TTGCCGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCC 48654 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 | ||| || |||||||||| |||||| || | || || || | |||||||| | Sbjct 48653 TCTGGTCCGATGCCATGAAGAACCGTATCATTGCTGAGAACGGCTCCATTCAGAACATCC 48594 Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG-- 365018 | | || |||||| | ||| | ||||||| ||||| ||||| ||||| ||| Sbjct 48593 CCAACATCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGCGCC 48534 Query 365019 -AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 || | || | |||||||| ||||| |||||||| || |||| |||||| | | Sbjct 48533 AAATTGTC---CAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGA 48477 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||||| | || || | |||| |||| |||||| ||| || |||| Sbjct 48476 ACATCCACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGA 48417 Query 365138 AATCCGGTCTTAAGACAGG 365156 | ||||| ||||| || Sbjct 48416 AGCTTGGTCTCAAGACCGG 48398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303335999024228