Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1011 100 2e-16 seq378 100 2e-16 seq1017 98.7 7e-16 >seq1011 Length=119094 Score = 100 bits (110), Expect = 2e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||| |||| | ||||| | || || ||||| ||| Sbjct 118236 GATGCCTTCTACCGCTACAAGATGGAGCGCCTTCAGACCAAGATTGAAGGCAAGGGTAAC 118177 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||||| || || ||||| || | || | ||||| | | Sbjct 118176 GGTATCAAGACCGTTGTCGTCAACTTGTCTAGCGTCGCCCAGTCTCTTGCCCGCCCAGGC 118117 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || || || | ||| || || |||||||| | | || | ||| Sbjct 118116 TCTTATGTCATCAAGTACTTTGGTTTCGAGCTGGGAGCTCAGACCAACATCGACCCCAAG 118057 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | | || |||||||||||| || || Sbjct 118056 GACGACCGTTGGATCATCAACGGCGCCCACGATGCCGCAAAGCTGCAGGACCACCTCGAT 117997 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||||||||| || || | ||| | ||||| |||||||| Sbjct 117996 GGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCTGAGACCGA 117944 >seq378 Length=193057 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||||||||||| ||||| ||||| || |||| || |||| || | || Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGC 156556 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || || || ||||| | || | || || |||||| ||| ||| Sbjct 156555 TTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTT 156496 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || || ||| |||||| || ||||| || || || || ||| Sbjct 156495 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 156436 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| |||||||| Sbjct 156435 AACGTCTTGACGAAGATCTGCAT 156413 >seq1017 Length=943 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 5/72 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 98 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 39 Query 25957 TAATCCTTTCAT 25968 |||||| ||||| Sbjct 38 TAATCCATTCAT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942897393874