Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 100 2e-16
seq378 100 2e-16
seq1017 98.7 7e-16
>seq1011
Length=119094
Score = 100 bits (110), Expect = 2e-16
Identities = 198/293 (68%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || |||||||||||||| ||| |||| | ||||| | || || ||||| |||
Sbjct 118236 GATGCCTTCTACCGCTACAAGATGGAGCGCCTTCAGACCAAGATTGAAGGCAAGGGTAAC 118177
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
||||| || ||||| | |||||| || || ||||| || | || | ||||| | |
Sbjct 118176 GGTATCAAGACCGTTGTCGTCAACTTGTCTAGCGTCGCCCAGTCTCTTGCCCGCCCAGGC 118117
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
| || | || || || || | ||| || || |||||||| | | || | |||
Sbjct 118116 TCTTATGTCATCAAGTACTTTGGTTTCGAGCTGGGAGCTCAGACCAACATCGACCCCAAG 118057
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| || | ||| | ||||| | || | | || |||||||||||| || ||
Sbjct 118056 GACGACCGTTGGATCATCAACGGCGCCCACGATGCCGCAAAGCTGCAGGACCACCTCGAT 117997
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || ||||||||| || || | ||| | ||||| ||||||||
Sbjct 117996 GGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCTGAGACCGA 117944
>seq378
Length=193057
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
||||| ||||||||||| ||||| ||||| || |||| || |||| || | ||
Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGC 156556
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || || || ||||| | || | || || |||||| ||| |||
Sbjct 156555 TTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTT 156496
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| ||||| | || || ||| |||||| || ||||| || || || || |||
Sbjct 156495 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 156436
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
|| || || ||||| ||||||||
Sbjct 156435 AACGTCTTGACGAAGATCTGCAT 156413
>seq1017
Length=943
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 5/72 (7%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 98 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 39
Query 25957 TAATCCTTTCAT 25968
|||||| |||||
Sbjct 38 TAATCCATTCAT 27
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942897393874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |