Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1011 190 2e-43 >seq1011 Length=119094 Score = 190 bits (210), Expect = 2e-43 Identities = 489/733 (67%), Gaps = 25/733 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || ||||| || |||||||| ||||| | | ||||| || || || | || Sbjct 29676 TCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG-GCGCA 29618 Query 92987 GGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 || ||||| ||||||||||| || | ||| ||| || || || | | ||| || Sbjct 29617 GGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGATGATGTCACG 29558 Query 93044 -ATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || || || || ||| |||| ||| | | | || || | ||| |||||| Sbjct 29557 GATCAC-CTCCTTGCTGGCACGGTTCTTG----AGGTGAGAGTGCAGCAGGCAGGCAAAG 29503 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || || || | ||| ||||| || || || | ||| ||| || || | ||| || | Sbjct 29502 TCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATG 29443 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || ||||| ||||||||||| || || || ||||| ||| || || ||||| || Sbjct 29442 AGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCG 29383 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCAT 93277 ||||| ||||| || || | || | |||||| | || || || || |||||| Sbjct 29382 ACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA---GGAAGAGTTCTTGTCCTGGATCCAC 29326 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || | ||||| ||||| || || ||| ||||| | || || || ||||| || ||| Sbjct 29325 TTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 29266 Query 93338 TAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || |||| | | |||| | ||||| || ||||| | ||| || || | || | Sbjct 29265 TAGCTGCGCTGG--CTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGG 29208 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| |||||||| || ||||| |||||||| |||| ||| || | |||||| | Sbjct 29207 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGA 29148 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || || | ||| || || || || ||||| || ||||| || || ||||| | Sbjct 29147 CCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGA 29088 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGG 93572 | |||| || || || || | ||||| ||||| || | | || | ||| ||| Sbjct 29087 AGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGT 29028 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||||| || || ||||| | |||||| | ||||| || || || || || || |||| Sbjct 29027 GCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGT 28968 Query 93633 ACATATCCCATAT 93645 |||| | ||| || Sbjct 28967 ACATTTGCCAGAT 28955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853463358960