Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq209 122 2e-22 seq1011 109 1e-18 seq567 107 4e-18 >seq209 Length=55891 Score = 122 bits (134), Expect = 2e-22 Identities = 437/674 (65%), Gaps = 21/674 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| | | Sbjct 26700 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 26641 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| ||| | || || || || |||||| |||| |||||| | || Sbjct 26640 GGTGCCGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTTACCAACATTGCT 26581 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTC 279870 ||||| | | |||||| | |||| | | | | || | | ||||| |||| Sbjct 26580 TGGCTGGAGAACTACCT--CAAGTC-GCACCCCG--ACATCACCAGTTTGATTGTGTCTC 26526 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||||||| | || ||| | ||| ||| ||||| |||| || || Sbjct 26525 ACGACTCTGGCTTCTTGGACAACGTCACCACTGACATTTACCACTACGAGCCCAACAAGA 26466 Query 279931 AGCTCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCC 279989 ||||| || || ||| || ||||| | || ||||| ||||| ||||| Sbjct 26465 AGCTC-GCATGCTACAAGGGTAACCTTGCGGCATTCGTCCAGCTTCGCCCCGAGGCCAAG 26407 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| ||| || ||| || | ||| | ||||| || || |||| Sbjct 26406 AGCTACTACACTCTGTCGGCGTCCAACGTCCAGTTCAAGTTCCCCCCTCCTGGTATTCTC 26347 Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || |||| || || || || ||||| | | |||||| | | || Sbjct 26346 ACTGGTATCAAGTCCCAGACCCGTGCCATCATTCGCATGAGCAACGTCTCTTACACCTAC 26287 Query 280110 CCCAATGGCCCCAA--CATC---TTCAGCAGTGTC-AACTCGCAGGTTTCTATGAACTCA 280163 ||||| | |||| |||| ||||| || || ||| | | || | ||| Sbjct 26286 CCCAAGGCTACCAAGCCATCGCTTTCAGACGTCTCTTGCTCCC---TCTCGCTCTCCTCG 26230 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || ||| | | || ||||| || ||||| || ||||||||||| ||||| | || || Sbjct 26229 CGTGTTGCTATTATCGGACCTAACGGTGCTGGCAAGTCTACCCTGATCAAGCTGCTCACC 26170 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 || |||||| |||||| || ||| |||||| |||||| | || || | ||| Sbjct 26169 GGTGAGACCATTCCCACTGTTGGCAAGGTTGAGAAGCACCCCAACCTCCGTATCGGCTAC 26110 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 | ||||| ||| | | ||| |||||| ||| |||| | |||||| ||||| || Sbjct 26109 ATTAAGCAGCATGCTCTGGAGCACGTCGAGATGCACTTGGAGAAGACTCCCAACCAGTAT 26050 Query 280344 ATTCAGTGGCGCTA 280357 | |||||||| || Sbjct 26049 CTCCAGTGGCGATA 26036 >seq1011 Length=119094 Score = 109 bits (120), Expect = 1e-18 Identities = 523/826 (63%), Gaps = 23/826 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | ||||| || |||||||||||| |||||||| | Sbjct 29778 TCAAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCA 29719 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || || | | ||||| || |||||||| | Sbjct 29718 GACTTGTAGATCTTCTCGTTGCCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATG 29659 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||||| | || || || | ||||| | | Sbjct 29658 TACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAG 29599 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 ||||||| || | || || || | || | |||||| | | | | Sbjct 29598 AATTCCTGCTCAATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCA 29539 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | |||| || | |||| ||| || | |||| | ||||||||||||||| Sbjct 29538 CGG----TTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTC 29483 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||| |||||||| | || || ||| ||||||| Sbjct 29482 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCA 29423 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | ||||||||| | | ||||| || Sbjct 29422 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAG 29363 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 ||||| ||||| || ||||||||| | |||| ||||| | ||||| Sbjct 29362 GCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGATGGCCCAGTCGGCCTT 29306 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| | || || || || || || || | ||||| || | |||| | | || Sbjct 29305 CTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTC 29246 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| | || | || || ||||| |||| || |||||| || | | || Sbjct 29245 CTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGAT 29186 Query 252153 CTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||| | | |||| || || | ||| || || | ||| || | ||| | Sbjct 29185 CTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTCGCCGCTGAAGCGCTC 29129 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 | | |||||| | || |||||||| | | ||||||||| | || ||| ||| Sbjct 29128 GACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGAT 29069 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 ||||| ||| || ||||| || || ||||||| | |||| |||| Sbjct 29068 GAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATC 29009 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 || ||||| | |||||||| | || | | ||||||||||||||| Sbjct 29008 AATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATT 28963 >seq567 Length=156643 Score = 107 bits (118), Expect = 4e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| |||||||| ||||| |||||| ||||| |||| | | || Sbjct 112570 CTCACTCTCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 112511 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 112510 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 112452 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 112451 GACTCTCTGGGTGCTCTG 112434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| |||||| || || || |||| ||||||||||| ||| Sbjct 113972 GGCGAGGACCTTTGCAACTGCACTTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTCAAC 113913 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 113912 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 113853 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| || || |||| ||| | | ||| ||||| | ||| Sbjct 113852 GGCAAGTCTACTCTCATGCGTGCTATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 113794 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 || || | ||| || | || ||||||||| | |||||| || Sbjct 113793 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGACCTTGACTCCGCT 113748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027822919706414