Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq209 122 2e-22
seq1011 109 1e-18
seq567 107 4e-18
>seq209
Length=55891
Score = 122 bits (134), Expect = 2e-22
Identities = 437/674 (65%), Gaps = 21/674 (3%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || |||||||||||||||||||| ||||| | || ||||| | |
Sbjct 26700 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 26641
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||||||||||| ||| | || || || || |||||| |||| |||||| | ||
Sbjct 26640 GGTGCCGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTTACCAACATTGCT 26581
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTC 279870
||||| | | |||||| | |||| | | | | || | | ||||| ||||
Sbjct 26580 TGGCTGGAGAACTACCT--CAAGTC-GCACCCCG--ACATCACCAGTTTGATTGTGTCTC 26526
Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930
|||||||||||||| | || ||| | ||| ||| ||||| |||| || ||
Sbjct 26525 ACGACTCTGGCTTCTTGGACAACGTCACCACTGACATTTACCACTACGAGCCCAACAAGA 26466
Query 279931 AGCTCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCC 279989
||||| || || ||| || ||||| | || ||||| ||||| |||||
Sbjct 26465 AGCTC-GCATGCTACAAGGGTAACCTTGCGGCATTCGTCCAGCTTCGCCCCGAGGCCAAG 26407
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| ||| || ||| || | ||| | ||||| || || ||||
Sbjct 26406 AGCTACTACACTCTGTCGGCGTCCAACGTCCAGTTCAAGTTCCCCCCTCCTGGTATTCTC 26347
Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109
|| |||| || || || || ||||| | | |||||| | | ||
Sbjct 26346 ACTGGTATCAAGTCCCAGACCCGTGCCATCATTCGCATGAGCAACGTCTCTTACACCTAC 26287
Query 280110 CCCAATGGCCCCAA--CATC---TTCAGCAGTGTC-AACTCGCAGGTTTCTATGAACTCA 280163
||||| | |||| |||| ||||| || || ||| | | || | |||
Sbjct 26286 CCCAAGGCTACCAAGCCATCGCTTTCAGACGTCTCTTGCTCCC---TCTCGCTCTCCTCG 26230
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
|| ||| | | || ||||| || ||||| || ||||||||||| ||||| | || ||
Sbjct 26229 CGTGTTGCTATTATCGGACCTAACGGTGCTGGCAAGTCTACCCTGATCAAGCTGCTCACC 26170
Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283
|| |||||| |||||| || ||| |||||| |||||| | || || | |||
Sbjct 26169 GGTGAGACCATTCCCACTGTTGGCAAGGTTGAGAAGCACCCCAACCTCCGTATCGGCTAC 26110
Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343
| ||||| ||| | | ||| |||||| ||| |||| | |||||| ||||| ||
Sbjct 26109 ATTAAGCAGCATGCTCTGGAGCACGTCGAGATGCACTTGGAGAAGACTCCCAACCAGTAT 26050
Query 280344 ATTCAGTGGCGCTA 280357
| |||||||| ||
Sbjct 26049 CTCCAGTGGCGATA 26036
>seq1011
Length=119094
Score = 109 bits (120), Expect = 1e-18
Identities = 523/826 (63%), Gaps = 23/826 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| | ||||| || |||||||||||| |||||||| |
Sbjct 29778 TCAAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCA 29719
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | ||| || || || | | ||||| || |||||||| |
Sbjct 29718 GACTTGTAGATCTTCTCGTTGCCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATG 29659
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||||| | || || || | ||||| | |
Sbjct 29658 TACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAG 29599
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
||||||| || | || || || | || | |||||| | | | |
Sbjct 29598 AATTCCTGCTCAATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCA 29539
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | |||| || | |||| ||| || | |||| | |||||||||||||||
Sbjct 29538 CGG----TTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTC 29483
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| ||||| ||||||||| | ||| |||||||| | || || ||| |||||||
Sbjct 29482 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCA 29423
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | ||||| || ||| | | ||||||||| | | ||||| ||
Sbjct 29422 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAG 29363
Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032
||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct 29362 GCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGATGGCCCAGTCGGCCTT 29306
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||| | || || || || || || || | ||||| || | |||| | | ||
Sbjct 29305 CTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTC 29246
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152
|| |||| | || | || || ||||| |||| || |||||| || | | ||
Sbjct 29245 CTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGAT 29186
Query 252153 CTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209
|||| | | |||| || || | ||| || || | ||| || | ||| |
Sbjct 29185 CTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTCGCCGCTGAAGCGCTC 29129
Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269
| | |||||| | || |||||||| | | ||||||||| | || ||| |||
Sbjct 29128 GACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGAT 29069
Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329
||||| ||| || ||||| || || ||||||| | |||| ||||
Sbjct 29068 GAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATC 29009
Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375
|| ||||| | |||||||| | || | | |||||||||||||||
Sbjct 29008 AATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATT 28963
>seq567
Length=156643
Score = 107 bits (118), Expect = 4e-18
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| |||||||| ||||| |||||| ||||| |||| | | ||
Sbjct 112570 CTCACTCTCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 112511
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 112510 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 112452
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||||| ||||||
Sbjct 112451 GACTCTCTGGGTGCTCTG 112434
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| || || |||| |||||| || || || |||| ||||||||||| |||
Sbjct 113972 GGCGAGGACCTTTGCAACTGCACTTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTCAAC 113913
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| | |||||||||| | || || ||||| ||||||||| || |
Sbjct 113912 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 113853
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| || || |||| ||| | | ||| ||||| | |||
Sbjct 113852 GGCAAGTCTACTCTCATGCGTGCTATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 113794
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
|| || | ||| || | || ||||||||| | |||||| ||
Sbjct 113793 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGACCTTGACTCCGCT 113748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027822919706414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |