Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 212 1e-49
seq434 179 7e-40
seq378 161 2e-34
seq567 104 4e-17
seq209 86.0 1e-11
>seq1011
Length=119094
Score = 212 bits (234), Expect = 1e-49
Identities = 570/864 (66%), Gaps = 17/864 (2%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||||||||| || | || || ||| |||||||||| ||||||
Sbjct 29817 TTCATGACACCAGCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCA 29758
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052
|||| |||||| ||||||||||||||||||||| | | | ||| ||
Sbjct 29757 CCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTG 29698
Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112
||||| || | | ||||| || || |||||||||||||| ||||||||| |||
Sbjct 29697 CCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAG 29638
Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172
|||||||| | || | |||||||| || ||| | ||| |||| || | |||
Sbjct 29637 TTCATGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACA 29578
Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || || |||| | ||| || | | || ||||| ||| | || |
Sbjct 29577 GCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCACG--GTTCTTGAGGTGAGAGT 29520
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
||| || |||| | ||| || |||||||| || ||||| ||||||||| |
Sbjct 29519 GCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 29460
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| |||||| |||||||| || || || |||||||| |||| | || | |||
Sbjct 29459 AGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 29400
Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG 10409
||| | | |||||| ||| | |||| || ||||||| || ||||| | | ||
Sbjct 29399 TGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCT 29340
Query 10410 CG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467
| | | | || |||||| | |||||||| | | | ||| || ||||| |
Sbjct 29339 TGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAA 29280
Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527
| || | |||||| | | | |||| | | | |||| || | || | ||||||||
Sbjct 29279 TGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGG 29220
Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586
|||| |||| ||||| | |||| | |||| | ||||||| ||| || |||
Sbjct 29219 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGAGCC 29161
Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646
|||| | ||| || || ||| | | ||||||||| | || ||||||||
Sbjct 29160 TCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCA 29101
Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG---- 10702
| | ||||||||| | |||||||| |||||||| ||| |||||||||||
Sbjct 29100 GAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGG 29041
Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762
|| ||| ||||| || ||||| | || | | ||| || |||||||||| |
Sbjct 29040 TTGTTC----CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGA 28985
Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786
||| |||||||||||||||| ||
Sbjct 28984 GGCCTCGGCCTTCTTGTACATTTG 28961
>seq434
Length=177494
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || || ||||| || |||||||| || ||||||
Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || | || || ||||| || |||
Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69465
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 69466 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
>seq378
Length=193057
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | |||| ||| || |||||||| || |||||||| || |||||
Sbjct 156125 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 156066
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| || ||||| || || | || ||||| || |||
Sbjct 156065 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156006
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||| || |||||||| || | || || ||
Sbjct 156005 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 155946
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| || |||||
Sbjct 155945 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
Score = 152 bits (168), Expect = 9e-32
Identities = 164/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| || |||||||| || ||||||
Sbjct 156411 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 156352
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || |||| || ||||| || ||
Sbjct 156351 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 156292
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || || ||||| | ||||||| |||||||| || | ||| || ||
Sbjct 156291 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 156232
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| ||||| ||||||||||||||||
Sbjct 156231 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGA 156195
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || ||| ||| || || ||||| || |||
Sbjct 156639 CCACCACGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156580
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || | |||||| || || || || || | || || || || |||
Sbjct 156579 AAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGA 156520
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||||| |||||| ||||||||||||| |||||| ||
Sbjct 156519 ATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACC 156460
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| || || || | ||||||||||| ||||||||
Sbjct 156459 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413
Score = 141 bits (156), Expect = 2e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285
||||| | || || ||||| |||| |||||||| || ||| ||| || || |||||
Sbjct 156876 TTTTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTG 156817
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| ||| | || | || ||||| | |||||| || || || || | | || |||
Sbjct 156816 TAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGG 156757
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || |||||||| |||||||| |||||||| | ||||||| ||||||||||| |
Sbjct 156756 TCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 156697
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | |||||| || || || || || ||||| ||||| || |||||
Sbjct 156696 GATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
>seq567
Length=156643
Score = 104 bits (114), Expect = 4e-17
Identities = 673/1058 (64%), Gaps = 84/1058 (8%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||| ||||||| | || ||| |||| |||||||| ||||| ||| || ||
Sbjct 112963 CGCCACTGAATGTACTCGGAAGGAGTCTTGTCAAGGTGGTTATCAATGTGGGCAAAGGCG 113022
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | | ||| ||
Sbjct 113023 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCACCGGTGGGG 113082
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || ||| || || ||||| || |||| |||||| ||||| ||||| || ||
Sbjct 113083 ATGAGC-TCACCGCAAAGAACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGACCGAT 113141
Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217
||| |||| || || || | ||| ||| || | | | ||| ||||| |||
Sbjct 113142 AACGGCAATACGAGAGCCGAGAGAGCA--CTGGAAGCTGATCTC-CTG--GATCTG-GGG 113195
Query 225218 CC---AGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACG 225264
| || | |||| |||| || | ||||||| ||||||
Sbjct 113196 CTTGGAGGTACCGGGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTT 113249
Query 225265 GTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGC 225324
| |||||| | | |||||| ||||| |||||||||||||| ||| || | |
Sbjct 113250 GGCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGA 113309
Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAG 225381
| | || |||||||| || || || ||||| ||||| | |||
Sbjct 113310 GGCACCGAGCTCGTAGTAGGACTTGGCGGAAGGAACACGCTTG---ACGAACTCCTTCAG 113366
Query 225382 GTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACA 225440
||| || ||| | ||||||||| || |||||| ||||| || ||| | ||| |
Sbjct 113367 GTTACCACGGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGA 113422
Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCC 225499
| ||||||||||||||||||||| || ||||||||||| | || | | ||
Sbjct 113423 CGTTGTCAAGGAAGCCAGAGTCGTGAGAGACAATGATGGAAGTGCAGGGGGAGCTGG--- 113479
Query 225500 TTGAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558
|||||| || | |||||| ||||| | ||||||| |||||| ||||| |||||
Sbjct 113480 -TGAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTC 113537
Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618
|| | ||| || |||| | || || || || |||| |||||||| |||||
Sbjct 113538 GAGCAACAGAATATCAGGGGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCA 113597
Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTT----AGCT--TCGTCAAAGCCGTA 225672
|| || ||||||| | |||| | ||| | || ||| |||||| |
Sbjct 113598 ACCACCAGACAGGGCG------GAAATCTCGCCCTTGACCATCTGCTCGGTGAAGCCGAA 113651
Query 225673 CTC---CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTC 225729
||| |||| || ||| || | | || | | || || | || |||| ||
Sbjct 113652 CTCGTCCAGGCGCTTCTCGACA-TCAGCCTGAGTGA--------CGTCGACCTTGGCCTC 113702
Query 225730 GGACGAGA--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGT 225779
| | || ||| | || |||||| || | ||| | ||||| ||
Sbjct 113703 AG-CAAGCTTCTTCATGGTCCAGTCGATGGTGGTCATCTCGGTATCAGCGGAGTCAAGGT 113761
Query 225780 CGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCA 225838
|||| || ||| | || ||| || | | || | |||||| ||||| | ||| |
Sbjct 113762 CGTGCTCAACGAAGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCG 113820
Query 225839 TTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAA 225898
|| || ||||| | || ||| |||||| | |||||||||||| || ||||||
Sbjct 113821 TTGTTGATAGCACGCATGAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAA 113880
Query 225899 TGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCA 225958
| | || ||||||| | |||| | || ||| || || |||||| |||| ||||||
Sbjct 113881 CGCTGACCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCA 113940
Query 225959 AGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
|| ||||| ||| | ||| |||||||| ||||||||
Sbjct 113941 AGAGAGAAAGTGCAGTTGCAAAGGTCCTCGCCCTCCTC 113978
>seq209
Length=55891
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||||| ||||||||||| ||| | |||| ||| |||| | || | | |
Sbjct 26036 TATCGCCACTGGAGATACTGGTTGGGAGTCTTCTCCAAGTGCATCTCGACGTGCTCCAGA 26095
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|||||||| | ||| | || || | |||||| |||||| || ||| |||
Sbjct 26096 GCATGCTGCTTAATGTAGCCGATACGGAGGTTGGGGTGCTTCTCAACCTTGCCAACAGTG 26155
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | ||| |||||||| | |||||| || |||| |||||| ||||| || || ||
Sbjct 26156 GGAATGGTCTCACCGGTGAGCAGCTTGATCAGGGTAGACTTGCCAGCACCGTTAGGTCCG 26215
Query 225158 AT 225159
||
Sbjct 26216 AT 26217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921610257624880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |