Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1011 212 1e-49 seq434 179 7e-40 seq378 161 2e-34 seq567 104 4e-17 seq209 86.0 1e-11 >seq1011 Length=119094 Score = 212 bits (234), Expect = 1e-49 Identities = 570/864 (66%), Gaps = 17/864 (2%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 29817 TTCATGACACCAGCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCA 29758 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 |||| |||||| ||||||||||||||||||||| | | | ||| || Sbjct 29757 CCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTG 29698 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | ||||| || || |||||||||||||| ||||||||| ||| Sbjct 29697 CCGAGAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAG 29638 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | |||||||| || ||| | ||| |||| || | ||| Sbjct 29637 TTCATGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACA 29578 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGAAT 10230 || || || |||| | ||| || | | || ||||| ||| | || | Sbjct 29577 GCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGCACG--GTTCTTGAGGTGAGAGT 29520 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||| || |||| | ||| || |||||||| || ||||| ||||||||| | Sbjct 29519 GCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 29460 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | |||||| |||||||| || || || |||||||| |||| | || | ||| Sbjct 29459 AGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 29400 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG 10409 ||| | | |||||| ||| | |||| || ||||||| || ||||| | | || Sbjct 29399 TGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCT 29340 Query 10410 CG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | | | | || |||||| | |||||||| | | | ||| || ||||| | Sbjct 29339 TGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAA 29280 Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | || | |||||| | | | |||| | | | |||| || | || | |||||||| Sbjct 29279 TGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGG 29220 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586 |||| |||| ||||| | |||| | |||| | ||||||| ||| || ||| Sbjct 29219 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGAGCC 29161 Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646 |||| | ||| || || ||| | | ||||||||| | || |||||||| Sbjct 29160 TCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCA 29101 Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG---- 10702 | | ||||||||| | |||||||| |||||||| ||| ||||||||||| Sbjct 29100 GAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGG 29041 Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762 || ||| ||||| || ||||| | || | | ||| || |||||||||| | Sbjct 29040 TTGTTC----CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGA 28985 Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786 ||| |||||||||||||||| || Sbjct 28984 GGCCTCGGCCTTCTTGTACATTTG 28961 >seq434 Length=177494 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || |||||| Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69465 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 69466 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq378 Length=193057 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 156125 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 156066 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 156065 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156006 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 156005 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 155946 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 155945 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899 Score = 152 bits (168), Expect = 9e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || |||||| Sbjct 156411 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 156352 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || |||| || ||||| || || Sbjct 156351 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 156292 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||||||| |||||||| || | ||| || || Sbjct 156291 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 156232 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| ||||| |||||||||||||||| Sbjct 156231 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGA 156195 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||| ||| || || ||||| || ||| Sbjct 156639 CCACCACGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156580 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || || || | || || || || ||| Sbjct 156579 AAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGA 156520 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||||| |||||| ||||||||||||| |||||| || Sbjct 156519 ATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACC 156460 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||||| |||||||| Sbjct 156459 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || ||||| |||| |||||||| || ||| ||| || || ||||| Sbjct 156876 TTTTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTG 156817 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||| | || | || ||||| | |||||| || || || || | | || ||| Sbjct 156816 TAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGG 156757 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || |||||||| |||||||| |||||||| | ||||||| ||||||||||| | Sbjct 156756 TCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 156697 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | |||||| || || || || || ||||| ||||| || ||||| Sbjct 156696 GATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq567 Length=156643 Score = 104 bits (114), Expect = 4e-17 Identities = 673/1058 (64%), Gaps = 84/1058 (8%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||||| | || ||| |||| |||||||| ||||| ||| || || Sbjct 112963 CGCCACTGAATGTACTCGGAAGGAGTCTTGTCAAGGTGGTTATCAATGTGGGCAAAGGCG 113022 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | | ||| || Sbjct 113023 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCACCGGTGGGG 113082 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| || || ||||| || |||| |||||| ||||| ||||| || || Sbjct 113083 ATGAGC-TCACCGCAAAGAACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGACCGAT 113141 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 ||| |||| || || || | ||| ||| || | | | ||| ||||| ||| Sbjct 113142 AACGGCAATACGAGAGCCGAGAGAGCA--CTGGAAGCTGATCTC-CTG--GATCTG-GGG 113195 Query 225218 CC---AGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACG 225264 | || | |||| |||| || | ||||||| |||||| Sbjct 113196 CTTGGAGGTACCGGGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTT 113249 Query 225265 GTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGC 225324 | |||||| | | |||||| ||||| |||||||||||||| ||| || | | Sbjct 113250 GGCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGA 113309 Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAG 225381 | | || |||||||| || || || ||||| ||||| | ||| Sbjct 113310 GGCACCGAGCTCGTAGTAGGACTTGGCGGAAGGAACACGCTTG---ACGAACTCCTTCAG 113366 Query 225382 GTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACA 225440 ||| || ||| | ||||||||| || |||||| ||||| || ||| | ||| | Sbjct 113367 GTTACCACGGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGA 113422 Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCC 225499 | ||||||||||||||||||||| || ||||||||||| | || | | || Sbjct 113423 CGTTGTCAAGGAAGCCAGAGTCGTGAGAGACAATGATGGAAGTGCAGGGGGAGCTGG--- 113479 Query 225500 TTGAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 |||||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| Sbjct 113480 -TGAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTC 113537 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 || | ||| || |||| | || || || || |||| |||||||| ||||| Sbjct 113538 GAGCAACAGAATATCAGGGGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCA 113597 Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTT----AGCT--TCGTCAAAGCCGTA 225672 || || ||||||| | |||| | ||| | || ||| |||||| | Sbjct 113598 ACCACCAGACAGGGCG------GAAATCTCGCCCTTGACCATCTGCTCGGTGAAGCCGAA 113651 Query 225673 CTC---CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTC 225729 ||| |||| || ||| || | | || | | || || | || |||| || Sbjct 113652 CTCGTCCAGGCGCTTCTCGACA-TCAGCCTGAGTGA--------CGTCGACCTTGGCCTC 113702 Query 225730 GGACGAGA--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGT 225779 | | || ||| | || |||||| || | ||| | ||||| || Sbjct 113703 AG-CAAGCTTCTTCATGGTCCAGTCGATGGTGGTCATCTCGGTATCAGCGGAGTCAAGGT 113761 Query 225780 CGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCA 225838 |||| || ||| | || ||| || | | || | |||||| ||||| | ||| | Sbjct 113762 CGTGCTCAACGAAGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCG 113820 Query 225839 TTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAA 225898 || || ||||| | || ||| |||||| | |||||||||||| || |||||| Sbjct 113821 TTGTTGATAGCACGCATGAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAA 113880 Query 225899 TGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCA 225958 | | || ||||||| | |||| | || ||| || || |||||| |||| |||||| Sbjct 113881 CGCTGACCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCA 113940 Query 225959 AGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || ||||| ||| | ||| |||||||| |||||||| Sbjct 113941 AGAGAGAAAGTGCAGTTGCAAAGGTCCTCGCCCTCCTC 113978 >seq209 Length=55891 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| ||||||||||| ||| | |||| ||| |||| | || | | | Sbjct 26036 TATCGCCACTGGAGATACTGGTTGGGAGTCTTCTCCAAGTGCATCTCGACGTGCTCCAGA 26095 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 |||||||| | ||| | || || | |||||| |||||| || ||| ||| Sbjct 26096 GCATGCTGCTTAATGTAGCCGATACGGAGGTTGGGGTGCTTCTCAACCTTGCCAACAGTG 26155 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||| |||||||| | |||||| || |||| |||||| ||||| || || || Sbjct 26156 GGAATGGTCTCACCGGTGAGCAGCTTGATCAGGGTAGACTTGCCAGCACCGTTAGGTCCG 26215 Query 225158 AT 225159 || Sbjct 26216 AT 26217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610257624880