Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq378 125 6e-24 seq434 96.9 3e-15 >seq378 Length=193057 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || ||| || || | || || || ||||||||||| |||||| Sbjct 156867 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156808 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||||| || || |||||||| |||| | ||||| ||||| |||||| Sbjct 156807 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 156748 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | || | |||||||| ||||| || Sbjct 156747 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACC 156688 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || |||||||||||||| || || ||||| ||||| Sbjct 156687 TCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||||||| ||| ||| || ||||| || |||||||| || Sbjct 156603 TCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAG 156544 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| || ||||||||||| || || ||||| ||||||| || | | Sbjct 156543 ATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATTG 156484 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||||| || |||| || | || |||||||||| || || || Sbjct 156483 TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACG 156424 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 156423 AAGATCTGCAT 156413 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 156128 ATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 156069 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || ||||| || |||||| | || |||||||| ||||| ||| Sbjct 156068 GACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGA 156009 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | ||| |||| || ||| Sbjct 156008 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCG 155949 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | ||| | || |||||||| || || || || || || ||||||| Sbjct 155948 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 155897 >seq434 Length=177494 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | || | ||||| || || || |||||||| ||| Sbjct 69285 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 69344 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || || || ||||||||| |||| | ||||| |||||||| || Sbjct 69345 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 69404 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | |||||||| || || || Sbjct 69405 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 69464 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || || || || ||||||||||| Sbjct 69465 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129003111048