Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1011 430 2e-115 seq160 367 2e-96 >seq1011 Length=119094 Score = 430 bits (476), Expect = 2e-115 Identities = 620/861 (72%), Gaps = 30/861 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||||||||| |||||||| ||| Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 29015 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 29073 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| | | Sbjct 29074 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 29133 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 29134 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 29193 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| Sbjct 29194 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAA 29250 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 29251 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 29310 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| |||| |||||| || | | | || | | || | | || | ||||| | Sbjct 29311 CGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 29369 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||||||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct 29370 CCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 29429 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || ||||| || || ||||| || ||||| |||||| | |||||| Sbjct 29430 AGAAGCGAGGTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 29488 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | |||||||||||||| ||| ||| ||||||| | || || Sbjct 29489 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAACCGTGCCAGC 29545 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| | |||| | ||||||||| || || || || ||| |||| ||| | || Sbjct 29546 AAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGACC 29605 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||||| ||||||||||| | |||| ||| |||||||| || Sbjct 29606 GAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAG 29665 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACG 43064 | || ||||||| ||| || || | | |||| || || ||||||| | Sbjct 29666 TTTGTTGCCGACCGTCTGCT-TG-----TCGCTCTCGGCAACGAGAAGATCTACAAGTCT 29719 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||| ||||| ||||||||||| || | | |||||||||||||| || ||| Sbjct 29720 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAG 29779 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||||||||| Sbjct 29780 AAGCGTGTCGCCGACTACCAG 29800 >seq160 Length=70483 Score = 367 bits (406), Expect = 2e-96 Identities = 1122/1714 (65%), Gaps = 59/1714 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| || | || || | ||||||| || | |||||||||||||||||||||| Sbjct 48347 ACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTG 48406 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| ||| | |||| Sbjct 48407 AGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGG 48459 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| ||| || | ||| | | || || Sbjct 48460 --GTCCTT---CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCA 48514 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| | | |||||||| | || |||| Sbjct 48515 GCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTG 48574 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 | | ||||||| ||||||||| | ||||| || | | |||| || | Sbjct 48575 ATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTC 48634 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTT 244092 |||| |||| ||| ||||| | |||| ||| || ||||| | || Sbjct 48635 TTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TT 48690 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || || || |||||||||| |||| | || ||||| Sbjct 48691 GACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTC 48750 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| |||||||||| ||||| | ||| || ||||| ||||| || | | || Sbjct 48751 GAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAG 48810 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 || ||||| | | |||||| || ||| | ||||| || ||| ||||||| Sbjct 48811 CAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAG 48870 Query 244273 GCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGA 244331 | | ||||| | |||| |||||||||| || || || | |||| | || Sbjct 48871 GTC--AGAGGGC-------TTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGC 48921 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCG 244390 || | | |||| | | | |||||||| || || ||| | || | || | Sbjct 48922 AGGTGAT-CCCTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCC- 48979 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || ||||| |||| |||||| ||||| |||||| |||||||| || || |||| | Sbjct 48980 TCTAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGA 49039 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||||| |||| || | ||| ||||||| || ||||| || || | || Sbjct 49040 GACTCAAAGGGCATGCGCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCA 49099 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||||| ||| ||| ||||| | ||| || | || ||||| |||| | || Sbjct 49100 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCA 49159 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 || | |||||| ||||||||| | || | | | || || ||| || ||||| Sbjct 49160 ATGATCTTGTTAAGGTTGCGGACAACCACCTTAGTA--ACTTCATGGAGCTTCTTAAAGT 49217 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 |||| | | ||| | | || || || || | | |||||| | || Sbjct 49218 CGTA-------GCAGCCTTCG---TTGTAGTCGACATAAGCAGG--GAGGGCCAAAGAGG 49265 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 |||||||||| || || ||||| || | | ||||| || |||||||||||||||| Sbjct 49266 CCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGT 49325 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | || |||||| ||||||| || || ||| |||| ||||||||| ||||||| Sbjct 49326 TGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGT 49385 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 ||||||||||||| || |||||| |||||| | | || | | ||| || | | Sbjct 49386 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCACAGCTTCT 49445 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| | ||| |||| ||| | ||||| |||||| |||| |||||| Sbjct 49446 GAGCGCGAATGGTCTTGCG-GCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCG 49504 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 ||||| ||| || || | ||||| ||||| || | ||||||||||| ||| Sbjct 49505 AACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATGAGCGTCC 49562 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | | || || | || ||||||||| ||||| |||||||| || |||| | Sbjct 49563 AGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACA 49622 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 ||| | | | ||| ||| ||| |||||| | || || | || ||||||| Sbjct 49623 AGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGA 49682 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||||||||| | ||||| || | ||| || || |||||||| || |||| Sbjct 49683 CGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCT 49742 Query 245166 GGTCCACCATCCTCTCG-AGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 | || || || ||| | || | |||||| | || || | || | || |||||||| Sbjct 49743 GATCGAC-ATA-TCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 49800 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCC 245283 | ||||||||||| ||||| | ||| || | | || | | || | || ||| Sbjct 49801 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 49860 Query 245284 TAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTC 245343 | || || || |||||| || | ||| || |||| | ||||| || ||||| Sbjct 49861 GATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 49920 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 |||||||| |||||||| || || ||||| ||||||||||||| || ||| | | Sbjct 49921 GATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 49980 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | ||||||||| |||||| ||| ||||| ||| Sbjct 49981 GGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAG 50014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326758331040