Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1011 107 4e-18 >seq1011 Length=119094 Score = 107 bits (118), Expect = 4e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || || || |||||||| | ||| ||| | || ||| Sbjct 29564 ATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGGCTCTCCCCTGCGCC 29623 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | ||||||||||| | || ||| ||||||||||| || || |||||||| | Sbjct 29624 CTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTG 29683 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| || || | ||||| | ||||| || |||||||||| ||| |||||| Sbjct 29684 CTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAG 29743 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 |||||| || || || || |||||||| || ||||||||| || || || Sbjct 29744 AACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTACCAGAAG 29803 Query 243742 CCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 29804 GCTGGTGTCATGAA 29817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102865106294900