Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq160 241 2e-58 seq1011 136 5e-27 >seq160 Length=70483 Score = 241 bits (266), Expect = 2e-58 Identities = 1173/1843 (64%), Gaps = 51/1843 (3%) Strand=Plus/Plus Query 113558 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 113617 |||| | |||| ||||| || ||| ||||| | || ||||||||||| || ||| Sbjct 48344 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 48403 Query 113618 TTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTT 113677 ||||| || |||||||| || | ||||| || | |||| | ||| || Sbjct 48404 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 48463 Query 113678 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATA 113737 | |||| || ||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct 48464 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 48523 Query 113738 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 113793 | | || || || ||| | ||||| || || |||| ||| ||| ||||| Sbjct 48524 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 48579 Query 113794 ATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCAT 113853 || ||||| | ||| || || |||||||| | | | || | | |||||| Sbjct 48580 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCAT 48639 Query 113854 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 113910 | | |||||||| || | | || |||| |||| || |||||||| Sbjct 48640 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 48696 Query 113911 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 113970 ||||| || || ||| |||| | | ||||| |||| ||||| ||||| ||||| Sbjct 48697 CTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 48756 Query 113971 CTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 114030 ||| ||||| |||| || |||| || ||| || ||||| || || | ||| | ||| Sbjct 48757 CTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCT 48816 Query 114031 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGC 114088 ||| || ||| | ||| | || | |||||||| | |||||| || | | | || Sbjct 48817 GTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGA 48876 Query 114089 TTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCA 114148 | || | | |||||| || || |||||||| || | ||| || || ||||||| Sbjct 48877 G--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 48934 Query 114149 AATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 114208 |||| || || || ||||| |||| || | || ||||| ||||| ||||| Sbjct 48935 AATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGG 48994 Query 114209 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT 114268 || ||||||||||| || | |||| | |||||| || ||||| | | | Sbjct 48995 TAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAA-GGGCAT 49053 Query 114269 CGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 114327 ||| | || || | || || ||||| |||||||| | ||||| || || || | Sbjct 49054 GCGCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCG 49113 Query 114328 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 114387 ||| || || || || || || || || || ||| || | | | || || Sbjct 49114 CATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAG 49173 Query 114388 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 114447 || | || ||||| || | |||||| ||||| | | || | | || | Sbjct 49174 GTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTT 49233 Query 114448 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 114507 | | |||||| ||| ||||| | || ||||| || || |||| ||| || Sbjct 49234 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGG 49293 Query 114508 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 114567 || |||||| || || || || || | || || || ||||| |||| |||||| Sbjct 49294 GGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 49353 Query 114568 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 114627 || || ||| ||| || ||||||||||| |||||| | || | || ||||| || Sbjct 49354 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 49413 Query 114628 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCAC-AGTGGCGTT---GGCT 114682 |||| || | || | | ||| | || ||| || | | ||| || | | Sbjct 49414 CTGGGCCTCCAAGATGGAATACCA-----CAGCTTCTGAGCGCGAATGGTCTTGCGGCCA 49468 Query 114683 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 114742 || ||||||| ||||||||| || | || || ||||| || || | || | Sbjct 49469 CGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCA 49528 Query 114743 AGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACACGC 114799 || || || || || | ||||| | ||| | ||| | ||| || |||||||||| Sbjct 49529 AGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGC 49585 Query 114800 TTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCA 114859 ||||||||||| || || ||||||||||| ||| | || ||| ||| | ||||| Sbjct 49586 TTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCC 49645 Query 114860 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 114919 | || || || || | || | || || | || || |||||||| || || ||| Sbjct 49646 TTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGG 49705 Query 114920 TACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTG 114973 || | || | | || | |||| |||| |||| | ||||| || || ||| Sbjct 49706 TAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTG 49762 Query 114974 GCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 115033 || || || |||||||| ||||| ||||| | ||| || || || || ||| Sbjct 49763 TTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATG 49822 Query 115034 CGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 115093 ||| |||| | || |||| || || || ||||| || ||| ||| || Sbjct 49823 TAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAA 49882 Query 115094 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCG 115153 || || ||| | | ||| || | ||||| || ||||| |||| |||| | || Sbjct 49883 ATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCG 49942 Query 115154 ATAAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGT 115212 | | |||||| |||| || ||||| || ||||| |||||||| ||||| || | Sbjct 49943 ACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGA 50001 Query 115213 CGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATG 115270 || ||| ||| | | |||| ||||| | ||| ||||||| ||| |||| Sbjct 50002 GGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATG 50059 Query 115271 TCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGG 115330 || || || ||||| | || || ||||| | ||||| || ||| || | | Sbjct 50060 TCATCTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATC 50119 Query 115331 ATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 | ||||| ||| || ||||||| |||||| ||||||| Sbjct 50120 TTGCCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 50162 >seq1011 Length=119094 Score = 136 bits (150), Expect = 5e-27 Identities = 350/525 (67%), Gaps = 15/525 (3%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 ||||| || || || |||| || |||| |||||||| || || |||| Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 29333 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | |||||| || ||||| | ||||| || || || || | ||||| || || | Sbjct 29332 GATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 29273 Query 126283 AAAGA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 126340 |||| || || | | ||| | || |||||||| | || ||||| || || Sbjct 29272 GAAGAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 29215 Query 126341 GTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 126399 || ||| ||||| | | ||| || | ||| | ||||||| | || || ||| Sbjct 29214 GTCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGG 29156 Query 126400 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459 ||||| ||||| || || | | ||||| ||||| ||||| || | Sbjct 29155 GATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGC 29096 Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 126516 ||||| || |||||||| | ||||| | || || | ||||||| || | || Sbjct 29095 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTT 29036 Query 126517 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 |||||||| |||||||| || ||||| | ||| || || ||||| Sbjct 29035 CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345729866320