Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq378 136 4e-27 seq434 100 3e-16 seq422 87.8 2e-12 >seq378 Length=193057 Score = 136 bits (150), Expect = 4e-27 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| |||||||||||| ||||| ||||| || || || || | Sbjct 156856 ACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACC 156797 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||||||||| || || | ||||||||||| | || | || |||||| Sbjct 156796 GTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTT 156737 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| | || | |||| ||| | | | |||||| |||||||| |||| ||| Sbjct 156736 GTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 156679 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || || ||||| || || |||||||| Sbjct 156678 ATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 113 bits (124), Expect = 5e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 |||||||||||| ||||| ||||| || || ||| || |||| || ||||||||||| Sbjct 156610 TGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACC 156551 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TT 42129 ||| || || || |||||||| || | || | | |||||||||| ||| | |||| | Sbjct 156550 AGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATCTTTGACT 156492 Query 42130 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 ||| | | | ||||| ||||| || || | |||||||| ||||| || | || Sbjct 156491 TGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACG 156432 Query 42190 TCTTTACAAAGATTTGCAT 42208 |||| || ||||| ||||| Sbjct 156431 TCTTGACGAAGATCTGCAT 156413 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | |||||| || | || || || ||||| |||||||| Sbjct 156090 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 156031 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 156030 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 155971 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 155970 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 155911 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 155910 GAAGATTTGCAT 155899 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 156376 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 156317 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | | |||||| ||| ||| || |||| ||| Sbjct 156316 GATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGT 156258 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || ||||| |||| |||||||| || || || || ||||| | Sbjct 156257 TGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGA 156198 Query 42196 C 42196 | Sbjct 156197 C 156197 >seq434 Length=177494 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 69321 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 69380 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 69381 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 69440 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 69441 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 69500 Query 42197 AAAGATTTGCATTTT 42211 || || ||||| || Sbjct 69501 GAAAATCTGCATCTT 69515 >seq422 Length=18081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || | || || |||||||| ||||| || | Sbjct 4402 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 4343 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 4342 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4283 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 4282 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4223 Query 42199 A 42199 | Sbjct 4222 A 4222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205643171360