Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq160 295 7e-75 >seq160 Length=70483 Score = 295 bits (326), Expect = 7e-75 Identities = 1082/1673 (65%), Gaps = 40/1673 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| ||||| || |||||||| ||| | |||||| Sbjct 50181 AACTACCAATACTTCGGCTTCAAGACTTTGGAGCGATCATACCTCCTGAAGCTTGATGGC 50122 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||||| || || || | ||||| || | | || || || | Sbjct 50121 AAGATTGTTGAGCGACCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGAT 50062 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| | ||| || | | | || |||| |||| | ||| ||| Sbjct 50061 GACATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCC 50002 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| |||||||||||||| || |||||| | | ||| |||| || || ||| || | Sbjct 50001 TCCCCCACCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTC 49942 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| || || | |||| || ||| ||||| | || Sbjct 49941 GAC-ATGAAGGATGACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGAT 49883 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 || || || || || ||||| | | |||||| | | ||||||| || || || Sbjct 49882 TTCCAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTA 49823 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || ||||| || ||||| ||||| | | || ||||| || || |||||||| Sbjct 49822 CATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAA 49763 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || | || || || ||||||||| | | | ||| | || || |||| || Sbjct 49762 CACTGCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCT 49703 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||||||||||||| ||||| | ||| | || || || |||||||||||||| || Sbjct 49702 CGAGCCCTGGCACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGA 49643 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | ||| | ||| ||||||||| | || || || || ||||| || Sbjct 49642 AGAGGTCCGCGCTCGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCG 49583 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| |||| | ||||| || | || ||||| ||||| || || || | || Sbjct 49582 TGTTGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGA 49523 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCA 94432 | | ||| | || || | ||||||| ||||| | |||| | |||| Sbjct 49522 CTGCTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCC- 49464 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || ||| |||||||||| || ||| |||| | ||| ||||| | Sbjct 49463 GCAAGACCATTCGCGCTCAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTG 49404 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 ||| |||| ||| | | |||||| | |||| |||| ||||||| || |||| | Sbjct 49403 GTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGG 49344 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| || || ||||||||||| ||||||| | | || |||||| Sbjct 49343 GAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGG 49284 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGT 94672 ||||||| || ||||||| ||| | ||| | ||| || ||| ||||| Sbjct 49283 TTGCTGTTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGT-CGA-----CTACA--A 49232 Query 94673 CTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTCTTGAAC 94731 | | ||| | | ||| | || |||| |||| || | || | ||| ||| Sbjct 49231 CGAAGGCTGC-TACGACTTTAAGAAGCTCCATGAAGTTACTAAGGTGG-TTGTCCGCAAC 49174 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 || |||| | | || || ||| |||||| |||| |||||| ||| ||| || Sbjct 49173 CTTAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATG 49114 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || || ||||| || | || ||||||||| | || ||||| | | |||| Sbjct 49113 CGCCACCGACCCATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTGCGC 49054 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 |||||| || ||| ||| || | |||| | | || || || | || || Sbjct 49053 ATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTAC 48994 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971 ||| |||| | | || | | | |||| || | || || | ||||| Sbjct 48993 CACGCGGCCCTAGAGGCTTCTATGGAGATCGCCA---AGGTGGAGGGTCCCTATGAATCA 48937 Query 94972 TTCCGCGGATCGCCCTTGGAAC--AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 ||| ||||| || || | | ||||||| | || |||||| | |||| ||| |||| Sbjct 48936 TTCAAGGGATCACC--TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGC 48879 Query 95030 CCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 |||| | |||| || ||||| |||| | | || || | | | |||||| | Sbjct 48878 CCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TCAAGGAGCACGGTACGCG 48821 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| |||| | ||||| ||||| || ||| ||| | ||||| || |||||||| Sbjct 48820 CAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAA 48761 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| ||||| |||| |||||||||| | ||| | | || || || ||||| || || Sbjct 48760 CGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTT 48701 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG-GTGT-GTGGGGTGA 95264 || || ||||| || || |||||| | || | | || | | || | || Sbjct 48700 CCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGTCCGATGC 48641 Query 95265 CAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320 || | ||||||| | |||| | ||||||||| | ||||||||||| | | Sbjct 48640 CA---TGAAGAACCGTATCATTGCT----GAGAACGGCTCCATTCAGAACATCCCCAACA 48588 Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || || |||||||| || ||||||||||| |||||||| | |||||| Sbjct 48587 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGCGC 48535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716682021840