Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 179 4e-40
seq378 116 4e-21
seq434 93.3 4e-14
>seq1011
Length=119094
Score = 179 bits (198), Expect = 4e-40
Identities = 507/766 (66%), Gaps = 31/766 (4%)
Strand=Plus/Plus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| ||
Sbjct 29048 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 29107
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGA-ACTCGAGGCGCA 52204
|| || ||| ||||| ||||| | | |||||| | ||| || | |||||| |
Sbjct 29108 ATTGTCAACGAGAACCTGGTCGAGCGC-TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCG 29166
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
|| ||| || || || | | || ||| | | ||| | |||| ||| |||||
Sbjct 29167 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 29226
Query 52265 CATTGAGCAGCT-GATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322
||| || || || || || || || || | ||||| | || | || || | |||
Sbjct 29227 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 29284
Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382
| | || ||| ||||||| ||||| | ||||| || ||||||||| || | | | |
Sbjct 29285 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 29344
Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
| | | ||| ||||| |||| ||||| ||| |||||||| | || || |||
Sbjct 29345 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGT 29404
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||||||| ||||||| | | || | | ||| | ||||| || ||||| || |
Sbjct 29405 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 29464
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT------- 52554
|||||| | || || || ||||| || |||||||| |||||||| ||||| ||
Sbjct 29465 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 29524
Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612
|| ||||| |||| | | || ||| ||||| ||| ||| |||
Sbjct 29525 CACCTCAAGA--ACCGTGCCAGCAA----------GGAGGTGATCCGTGA-CATCATCAC 29571
Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672
|| || || || || |||| || || || | || || || || ||||| ||
Sbjct 29572 CGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGG 29631
Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
||||||| | | ||| |||||||||||||||| || || |||||| | ||
Sbjct 29632 CATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCGC 29691
Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791
||| |||| | | ||| || ||| || ||| || ||||| || ||| | |||||||
Sbjct 29692 TCTC-GGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTT 29750
Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || | |||||||||||||| || |||||||| |||| ||| ||
Sbjct 29751 CTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTA 29796
>seq378
Length=193057
Score = 116 bits (128), Expect = 4e-21
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGC 138445
||| || || | ||||| ||| || || | || || |||||| ||||||||||||||||
Sbjct 156868 GCCACCACGAAGACGCAGAACCAAGTGCA-GTGTGCTCTCCTTCTGAATGTTGTAGTCGC 156810
Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
||| || || ||| || || || ||||| | | |||| | ||||| ||||| ||||
Sbjct 156809 TCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAG 156750
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563
| || || || ||||| ||| | || | || | ||| || | |||||||| || ||
Sbjct 156749 GAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTC 156692
Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||||| || | || || || |||||||| || || ||||| |||||
Sbjct 156691 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 114 bits (126), Expect = 1e-20
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| ||||||||||||||||||| ||| || |||||| || || ||||| | | |
Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540
||| |||||||| || |||||||| ||||| || ||||| ||| | |||| || ||
Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTTTGACTTGACAT 156486
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||| | || || ||||| | || | || || || |||| || ||
Sbjct 156485 TG-TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 156427
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 156426 ACGAAGATCTGCAT 156413
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||||||||| || || |
Sbjct 156092 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 156033
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || |||||||| ||||| ||||| || || || ||||| ||| || || | |
Sbjct 156032 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 155973
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| |||| ||||| ||||||| || | || || || || || || ||
Sbjct 155972 TTG-TCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 155914
Query 138600 TACAAAAATCTGCATGG 138616
|| || || |||||||
Sbjct 155913 GACGAAGATTTGCATGG 155897
>seq434
Length=177494
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | |||| | ||||| |||||||| ||
Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| ||||||||
Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 69464
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||| || || || || || || || |||||||||||
Sbjct 69465 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255861742880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |