Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1011 179 4e-40 seq378 116 4e-21 seq434 93.3 4e-14 >seq1011 Length=119094 Score = 179 bits (198), Expect = 4e-40 Identities = 507/766 (66%), Gaps = 31/766 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| || Sbjct 29048 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 29107 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGA-ACTCGAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | |||||| | Sbjct 29108 ATTGTCAACGAGAACCTGGTCGAGCGC-TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCG 29166 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 29167 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 29226 Query 52265 CATTGAGCAGCT-GATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || || || || || || || || | ||||| | || | || || | ||| Sbjct 29227 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 29284 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| ||||||| ||||| | ||||| || ||||||||| || | | | | Sbjct 29285 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 29344 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | ||| ||||| |||| ||||| ||| |||||||| | || || ||| Sbjct 29345 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGT 29404 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||||| ||||||| | | || | | ||| | ||||| || ||||| || | Sbjct 29405 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 29464 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT------- 52554 |||||| | || || || ||||| || |||||||| |||||||| ||||| || Sbjct 29465 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 29524 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612 || ||||| |||| | | || ||| ||||| ||| ||| ||| Sbjct 29525 CACCTCAAGA--ACCGTGCCAGCAA----------GGAGGTGATCCGTGA-CATCATCAC 29571 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || || || |||| || || || | || || || || ||||| || Sbjct 29572 CGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGG 29631 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | ||| |||||||||||||||| || || |||||| | || Sbjct 29632 CATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCGC 29691 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||| |||| | | ||| || ||| || ||| || ||||| || ||| | ||||||| Sbjct 29692 TCTC-GGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTT 29750 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || | |||||||||||||| || |||||||| |||| ||| || Sbjct 29751 CTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTA 29796 >seq378 Length=193057 Score = 116 bits (128), Expect = 4e-21 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGC 138445 ||| || || | ||||| ||| || || | || || |||||| |||||||||||||||| Sbjct 156868 GCCACCACGAAGACGCAGAACCAAGTGCA-GTGTGCTCTCCTTCTGAATGTTGTAGTCGC 156810 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| || || ||| || || || ||||| | | |||| | ||||| ||||| |||| Sbjct 156809 TCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAG 156750 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | || || || ||||| ||| | || | || | ||| || | |||||||| || || Sbjct 156749 GAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTC 156692 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || | || || || |||||||| || || ||||| ||||| Sbjct 156691 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 114 bits (126), Expect = 1e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||||| ||| || |||||| || || ||||| | | | Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| |||||||| || |||||||| ||||| || ||||| ||| | |||| || || Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTTTGACTTGACAT 156486 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | || || ||||| | || | || || || |||| || || Sbjct 156485 TG-TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 156427 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 156426 ACGAAGATCTGCAT 156413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 156092 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 156033 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 156032 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 155973 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||||| ||||||| || | || || || || || || || Sbjct 155972 TTG-TCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 155914 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 155913 GACGAAGATTTGCATGG 155897 >seq434 Length=177494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 69464 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 69465 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255861742880