Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1011 158 1e-33 seq378 138 1e-27 seq160 129 6e-25 seq434 127 2e-24 seq422 95.1 1e-14 >seq1011 Length=119094 Score = 158 bits (174), Expect = 1e-33 Identities = 480/727 (66%), Gaps = 21/727 (3%) Strand=Plus/Plus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||||||| | || |||| |||||| ||| | |||||| | | |||| Sbjct 29082 TGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 29140 Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 | | || || | ||||| | | ||| ||| || | | || || | Sbjct 29141 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 29200 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038 |||||| | || | ||| ||| ||||| || || |||||| || ||| || ||| Sbjct 29201 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGCG 29259 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| | |||| ||| || ||| | |||| |||||||| |||| Sbjct 29260 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 29318 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157 |||| |||| || | || | ||| | | ||| | || || | || || ||| Sbjct 29319 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCG 29378 Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217 ||||||||| |||||||| || |||||| | || || | | || | || Sbjct 29379 CCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAG 29438 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | ||||| || || || ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 29439 GTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACA 29498 Query 47278 CCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331 | |||||||||| || || ||| || | | ||| || | | ||| || ||| Sbjct 29499 CTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGCAAG---GAGGTGA 29555 Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391 | ||| ||||| | |||| || ||| |||||| ||| || || |||||| Sbjct 29556 TC--CGT----GACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGG 29609 Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 |||| ||| | | | || |||||| | | |||||| |||||||||| |||| Sbjct 29610 CTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTG 29669 Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511 | |||||||| ||||| || || | ||||| ||| | | | || || | Sbjct 29670 TTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCCCT 29729 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 | || || ||| | |||||||| |||| |||||||||||||| || |||||||| |||| Sbjct 29730 TTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCG 29789 Query 47572 GCGAATA 47578 ||| || Sbjct 29790 CCGACTA 29796 >seq378 Length=193057 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||| || ||||| ||||| |||| | Sbjct 156867 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156808 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| ||||||| |||||||| || ||||| Sbjct 156807 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 156748 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| ||||| ||| |||||| | | || || Sbjct 156747 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGATTCCAC 156689 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||||||||| || || ||||| ||||| Sbjct 156688 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || || || || ||| Sbjct 156095 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 156036 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 156035 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 155976 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | |||||| |||| ||| | || |||||||| || || Sbjct 155975 ACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 155916 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 155915 TTGACGAAGATTTGCATGG 155897 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| |||| || |||||| || || ||||| || ||||| | Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||| | ||||||||||| ||||| || |||||||||||| ||| | | || ||||| | Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 156486 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | || || || | || | || |||||||||| || || | Sbjct 156485 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 156425 CGAAGATCTGCAT 156413 >seq160 Length=70483 Score = 129 bits (142), Expect = 6e-25 Identities = 637/991 (64%), Gaps = 35/991 (4%) Strand=Plus/Plus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || || Sbjct 48661 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 48720 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | | | || | |||| |||| | |||||||| |||||||||| || || ||||| | Sbjct 48721 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 48780 Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215 ||| | || || ||||| || | ||||| ||| | | ||||| || ||| | Sbjct 48781 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG-A 48839 Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275 ||| ||| || | ||| | ||||| | || | ||| | || || | ||| Sbjct 48840 TCTGCTCCTTGAGCGAGTCCCACTCCCACA---GGTCAGAGGGCTTGACATCCCACATGT 48896 Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332 || | || | || || |||| |||| | || || | | |||||||| ||||| | Sbjct 48897 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAATGATTCATAGGGACCCT 48953 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | | |||||| | || ||| || || |||| ||| || ||||| |||| Sbjct 48954 CCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTAGATTGTCTCAAAGATCT 49013 Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451 | ||| | |||| | ||||| || |||| || ||| | || ||| Sbjct 49014 GCTTGTTCA-GCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGCAGAGCAAGGAAAGCG 49072 Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGC 146510 ||||| |||||||| | || ||||||| ||| ||||| | |||| ||||| || | Sbjct 49073 TCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCC 49132 Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 || | | ||| ||||||||| || ||||||||||| || || || || || | || Sbjct 49133 TCCTGGACAGGG-TAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACCACCTT 49191 Query 146571 CGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGACGCACTTG 146628 || | || ||| | |||| | | || ||| || || ||| | Sbjct 49192 AGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA--GTCGACATAAGCA 49249 Query 146629 TTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACA 146688 || ||| | |||||||| ||| || || ||| |||||| | | || |||| | Sbjct 49250 GGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATG 49309 Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT- 146747 ||||||| |||||||||| || |||| | |||| || || ||||| || ||| Sbjct 49310 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---CTTG 49366 Query 146748 --GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACG 146805 |||||||| ||||||||||||||| | || || || ||| | || ||| | | Sbjct 49367 CGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAG 49426 Query 146806 AT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTTCG 146862 || |||| | || | | |||| | | | ||||| || || || | ||| ||| Sbjct 49427 ATGGAAT---ACCACAGCTTCTGAGCGCGAATGGTCTTGCGGCCACGTCCCTCCTTCTCG 49483 Query 146863 TATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACT 146920 || ||||| ||||| || || || | || || ||| ||||| || | | Sbjct 49484 TACTTCTCATACAAAGCCTCGAACTCCTCG--CCATAGCAGTCAGCAAGGCCAGGGCATT 49541 Query 146921 TTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGG 146980 ||||| || | |||| ||| || |||| || || || | ||| || | ||||| Sbjct 49542 CGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGG 49601 Query 146981 GAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011 ||||||| || | || | |||||| ||||| Sbjct 49602 GAATCCAGAGAGCAAGGAACAAGTCACGAGC 49632 >seq434 Length=177494 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 69283 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 69342 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 69343 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 69402 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 69403 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 69462 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 69463 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq422 Length=18081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494535276960