Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 158 1e-33
seq378 138 1e-27
seq160 129 6e-25
seq434 127 2e-24
seq422 95.1 1e-14
>seq1011
Length=119094
Score = 158 bits (174), Expect = 1e-33
Identities = 480/727 (66%), Gaps = 21/727 (3%)
Strand=Plus/Plus
Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920
||||||||||||||||| | || |||| |||||| ||| | |||||| | | ||||
Sbjct 29082 TGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 29140
Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979
| | || || | ||||| | | ||| ||| || | | || || |
Sbjct 29141 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 29200
Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038
|||||| | || | ||| ||| ||||| || || |||||| || ||| || |||
Sbjct 29201 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGCG 29259
Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097
||| || || || |||| | |||| ||| || ||| | |||| |||||||| ||||
Sbjct 29260 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 29318
Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157
|||| |||| || | || | ||| | | ||| | || || | || || |||
Sbjct 29319 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCG 29378
Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217
||||||||| |||||||| || |||||| | || || | | || | ||
Sbjct 29379 CCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAG 29438
Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277
| | ||||| || || || ||| ||||||||| ||||| | ||||| || |||||||
Sbjct 29439 GTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACA 29498
Query 47278 CCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331
| |||||||||| || || ||| || | | ||| || | | ||| || |||
Sbjct 29499 CTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGCAAG---GAGGTGA 29555
Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391
| ||| ||||| | |||| || ||| |||||| ||| || || ||||||
Sbjct 29556 TC--CGT----GACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGG 29609
Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451
|||| ||| | | | || |||||| | | |||||| |||||||||| ||||
Sbjct 29610 CTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTG 29669
Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511
| |||||||| ||||| || || | ||||| ||| | | | || || |
Sbjct 29670 TTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCCCT 29729
Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571
| || || ||| | |||||||| |||| |||||||||||||| || |||||||| ||||
Sbjct 29730 TTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCG 29789
Query 47572 GCGAATA 47578
||| ||
Sbjct 29790 CCGACTA 29796
>seq378
Length=193057
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||| || ||||| ||||| |||| |
Sbjct 156867 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156808
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || ||||| ||||||| |||||||| || |||||
Sbjct 156807 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 156748
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| ||||| ||| |||||| | | || ||
Sbjct 156747 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGATTCCAC 156689
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||||||||| || || ||||| |||||
Sbjct 156688 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || || || ||| || || || || |||
Sbjct 156095 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 156036
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| || ||||| ||||||||||||||| ||| || |||
Sbjct 156035 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 155976
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| || | | |||||| |||| ||| | || |||||||| || ||
Sbjct 155975 ACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 155916
Query 127097 TTTACAAAAATCTGCATGG 127115
|| || || || |||||||
Sbjct 155915 TTGACGAAGATTTGCATGG 155897
Score = 102 bits (112), Expect = 8e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || ||||| ||||| |||| || |||||| || || ||||| || ||||| |
Sbjct 156604 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 156545
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040
||| | ||||||||||| ||||| || |||||||||||| ||| | | || ||||| |
Sbjct 156544 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 156486
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
|||| |||||| | || || || | || | || |||||||||| || || |
Sbjct 156485 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 156426
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 156425 CGAAGATCTGCAT 156413
>seq160
Length=70483
Score = 129 bits (142), Expect = 6e-25
Identities = 637/991 (64%), Gaps = 35/991 (4%)
Strand=Plus/Plus
Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096
||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || ||
Sbjct 48661 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 48720
Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156
| | | || | |||| |||| | |||||||| |||||||||| || || ||||| |
Sbjct 48721 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 48780
Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215
||| | || || ||||| || | ||||| ||| | | ||||| || ||| |
Sbjct 48781 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG-A 48839
Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275
||| ||| || | ||| | ||||| | || | ||| | || || | |||
Sbjct 48840 TCTGCTCCTTGAGCGAGTCCCACTCCCACA---GGTCAGAGGGCTTGACATCCCACATGT 48896
Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332
|| | || | || || |||| |||| | || || | | |||||||| ||||| |
Sbjct 48897 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAATGATTCATAGGGACCCT 48953
Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392
| | |||||| | || ||| || || |||| ||| || ||||| ||||
Sbjct 48954 CCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTAGATTGTCTCAAAGATCT 49013
Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451
| ||| | |||| | ||||| || |||| || ||| | || |||
Sbjct 49014 GCTTGTTCA-GCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGCAGAGCAAGGAAAGCG 49072
Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGC 146510
||||| |||||||| | || ||||||| ||| ||||| | |||| ||||| || |
Sbjct 49073 TCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCC 49132
Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570
|| | | ||| ||||||||| || ||||||||||| || || || || || | ||
Sbjct 49133 TCCTGGACAGGG-TAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACCACCTT 49191
Query 146571 CGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGACGCACTTG 146628
|| | || ||| | |||| | | || ||| || || ||| |
Sbjct 49192 AGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA--GTCGACATAAGCA 49249
Query 146629 TTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACA 146688
|| ||| | |||||||| ||| || || ||| |||||| | | || |||| |
Sbjct 49250 GGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATG 49309
Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT- 146747
||||||| |||||||||| || |||| | |||| || || ||||| || |||
Sbjct 49310 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---CTTG 49366
Query 146748 --GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACG 146805
|||||||| ||||||||||||||| | || || || ||| | || ||| | |
Sbjct 49367 CGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAG 49426
Query 146806 AT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTTCG 146862
|| |||| | || | | |||| | | | ||||| || || || | ||| |||
Sbjct 49427 ATGGAAT---ACCACAGCTTCTGAGCGCGAATGGTCTTGCGGCCACGTCCCTCCTTCTCG 49483
Query 146863 TATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACT 146920
|| ||||| ||||| || || || | || || ||| ||||| || | |
Sbjct 49484 TACTTCTCATACAAAGCCTCGAACTCCTCG--CCATAGCAGTCAGCAAGGCCAGGGCATT 49541
Query 146921 TTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGG 146980
||||| || | |||| ||| || |||| || || || | ||| || | |||||
Sbjct 49542 CGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGG 49601
Query 146981 GAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011
||||||| || | || | |||||| |||||
Sbjct 49602 GAATCCAGAGAGCAAGGAACAAGTCACGAGC 49632
>seq434
Length=177494
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | |||||||| || || || ||||| |||
Sbjct 69283 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 69342
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || ||| || ||||| || |||||| |||||||||||||||| || ||
Sbjct 69343 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 69402
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| |||||| | | |||
Sbjct 69403 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 69462
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || |||||||||||
Sbjct 69463 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
>seq422
Length=18081
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || ||||| |||||
Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
||||||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || ||||| ||||| || || || |||
Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 4221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475494535276960
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