Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq160 246 4e-60 seq1011 136 5e-27 >seq160 Length=70483 Score = 246 bits (272), Expect = 4e-60 Identities = 1180/1848 (64%), Gaps = 61/1848 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | |||| ||||| || ||| ||||| | || ||||||||||| || ||| Sbjct 48344 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 48403 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 ||||| || |||||||| || | ||||| || | |||| | ||| || Sbjct 48404 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 48463 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | |||| || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 48464 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 48523 Query 115699 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 115754 | | || || || ||| | ||||| || || |||| ||| ||| ||||| Sbjct 48524 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 48579 Query 115755 ATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTT 115811 || ||||| | ||| || || || ||||| || | |||| | | ||| Sbjct 48580 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTT---CTCAGCAATGATACGGTTCTT 48636 Query 115812 CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGA 115867 ||| | | |||||||| || | | || |||| | | ||| | |||| Sbjct 48637 CATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 48692 Query 115868 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAA 115927 |||| ||||| || || ||| |||| | | |||||||||| ||||| ||||| | Sbjct 48693 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 48752 Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987 ||||||| ||||| |||| || |||| || ||| || ||||| || || | ||| | Sbjct 48753 AGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCA 48812 Query 115988 GGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTT 116045 ||||||||| ||| | || | || | |||||||| | |||||| || | | | Sbjct 48813 AGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 48872 Query 116046 GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCC 116105 || | || | |||||||| || || |||||||| || | ||| || || ||||| Sbjct 48873 CAGAG--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 48930 Query 116106 CTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGC 116165 || |||| ||||| || ||||| |||| || | || ||||| ||||| || Sbjct 48931 CTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGC 48990 Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 116225 ||| || ||||||||||| || | |||| | |||||| || ||||| | Sbjct 48991 GTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGG 49050 Query 116226 GAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284 | | ||| | || || | || || ||||| |||||||| | ||||| || || | Sbjct 49051 CATGC-GCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGT 49109 Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTAT 116344 | | ||| || || || || || || || || || ||| || | | | | Sbjct 49110 GGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGT 49169 Query 116345 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG 116404 | || || | || ||||| || | |||||| ||||| | | || | | || Sbjct 49170 TAAGGTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTT 49229 Query 116405 TCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCAT 116464 | | | |||||| ||| ||||| | || ||||| || || |||| ||| | Sbjct 49230 CGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGT 49289 Query 116465 CCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGT 116524 | || |||||| || || || || || | || || || ||||| |||| || Sbjct 49290 CTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGT 49349 Query 116525 TCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584 |||| || || ||| ||| || ||||||||||||||||| | || | || |||| Sbjct 49350 TCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCT 49409 Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCAC-AGTGGCGTT--- 116639 | || |||| || | || | |||| | || ||| || | | ||| || Sbjct 49410 CGGTCTGGGCCTCCAAGATGG-----AATACCACAGCTTCTGAGCGCGAATGGTCTTGCG 49464 Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CT 116698 | | || ||||||| ||||||||| || | ||||| ||||| || ||| ||| | Sbjct 49465 GCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTC-GCCATAGCAGT 49523 Query 116699 CTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAA 116755 | | || || || || || | || || | ||| | ||| | ||| || ||||| Sbjct 49524 CAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAA 49580 Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815 | |||||||||||||| || || |||||||| || ||| | || ||| ||| | | Sbjct 49581 CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCT 49640 Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875 |||| | || || || || | || | || || | || || |||||||| || | Sbjct 49641 CTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCT 49700 Query 116876 CCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCG 116929 | ||||| | || | | || | |||| |||| |||| | ||||| || | Sbjct 49701 CGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTACCACCCTGATCGACATATCTGG 49757 Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989 | || ||| || || |||||||| ||||| ||||| | ||| || || || || Sbjct 49758 CAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAG 49817 Query 116990 GAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 ||| ||| | |||| | || ||||| || || || ||||| || ||| || Sbjct 49818 CAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCT 49877 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | || || || ||| | | ||| || | ||||| || ||||| |||| |||| Sbjct 49878 TGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCA 49937 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTT 117168 | ||| | |||||| |||| || ||||| || ||||| |||||||| ||||| Sbjct 49938 TGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGTG 49996 Query 117169 GGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGG 117226 || | || ||| ||| | | |||| ||||| | ||| ||||||| |||| Sbjct 49997 GGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCT 50054 Query 117227 GAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 |||||| || || ||||| | || || ||||| | ||||| || ||| || | Sbjct 50055 CAATGTCATCTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAA 50114 Query 117287 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | | ||||| ||| || ||||||| |||||| ||||||| Sbjct 50115 CAATCTTGCCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 50162 >seq1011 Length=119094 Score = 136 bits (150), Expect = 5e-27 Identities = 347/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || || ||| |||||| Sbjct 29508 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 29449 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 29448 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 29389 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || |||| || |||| ||||||||| | ||| | | | Sbjct 29388 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 29329 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||| || ||||| | ||||| || || || || | ||||| || || | ||| Sbjct 29328 CACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 29269 Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || || | | ||| | || |||||||| | || ||||| || || || | Sbjct 29268 AGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCT 29211 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| | || || ||| ||| Sbjct 29210 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 29152 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| ||||| || | ||| Sbjct 29151 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 29092 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 29091 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 29032 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| |||||||| || ||||| | ||| || || ||||| Sbjct 29031 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499117042640