Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq160 246 4e-60
seq1011 136 5e-27
>seq160
Length=70483
Score = 246 bits (272), Expect = 4e-60
Identities = 1180/1848 (64%), Gaps = 61/1848 (3%)
Strand=Plus/Plus
Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578
|||| | |||| ||||| || ||| ||||| | || ||||||||||| || |||
Sbjct 48344 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 48403
Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638
||||| || |||||||| || | ||||| || | |||| | ||| ||
Sbjct 48404 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 48463
Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698
| |||| || ||||| ||||| ||||| ||||| || ||||| ||||||||
Sbjct 48464 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 48523
Query 115699 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 115754
| | || || || ||| | ||||| || || |||| ||| ||| |||||
Sbjct 48524 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 48579
Query 115755 ATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTT 115811
|| ||||| | ||| || || || ||||| || | |||| | | |||
Sbjct 48580 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTT---CTCAGCAATGATACGGTTCTT 48636
Query 115812 CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGA 115867
||| | | |||||||| || | | || |||| | | ||| | ||||
Sbjct 48637 CATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 48692
Query 115868 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAA 115927
|||| ||||| || || ||| |||| | | |||||||||| ||||| ||||| |
Sbjct 48693 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 48752
Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987
||||||| ||||| |||| || |||| || ||| || ||||| || || | ||| |
Sbjct 48753 AGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCA 48812
Query 115988 GGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTT 116045
||||||||| ||| | || | || | |||||||| | |||||| || | | |
Sbjct 48813 AGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 48872
Query 116046 GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCC 116105
|| | || | |||||||| || || |||||||| || | ||| || || |||||
Sbjct 48873 CAGAG--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 48930
Query 116106 CTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGC 116165
|| |||| ||||| || ||||| |||| || | || ||||| ||||| ||
Sbjct 48931 CTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGC 48990
Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 116225
||| || ||||||||||| || | |||| | |||||| || ||||| |
Sbjct 48991 GTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGG 49050
Query 116226 GAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284
| | ||| | || || | || || ||||| |||||||| | ||||| || || |
Sbjct 49051 CATGC-GCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGT 49109
Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTAT 116344
| | ||| || || || || || || || || || ||| || | | | |
Sbjct 49110 GGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGT 49169
Query 116345 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG 116404
| || || | || ||||| || | |||||| ||||| | | || | | ||
Sbjct 49170 TAAGGTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTT 49229
Query 116405 TCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCAT 116464
| | | |||||| ||| ||||| | || ||||| || || |||| ||| |
Sbjct 49230 CGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGT 49289
Query 116465 CCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGT 116524
| || |||||| || || || || || | || || || ||||| |||| ||
Sbjct 49290 CTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGT 49349
Query 116525 TCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584
|||| || || ||| ||| || ||||||||||||||||| | || | || ||||
Sbjct 49350 TCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCT 49409
Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCAC-AGTGGCGTT--- 116639
| || |||| || | || | |||| | || ||| || | | ||| ||
Sbjct 49410 CGGTCTGGGCCTCCAAGATGG-----AATACCACAGCTTCTGAGCGCGAATGGTCTTGCG 49464
Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CT 116698
| | || ||||||| ||||||||| || | ||||| ||||| || ||| ||| |
Sbjct 49465 GCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTC-GCCATAGCAGT 49523
Query 116699 CTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAA 116755
| | || || || || || | || || | ||| | ||| | ||| || |||||
Sbjct 49524 CAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAA 49580
Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815
| |||||||||||||| || || |||||||| || ||| | || ||| ||| | |
Sbjct 49581 CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCT 49640
Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875
|||| | || || || || | || | || || | || || |||||||| || |
Sbjct 49641 CTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCT 49700
Query 116876 CCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCG 116929
| ||||| | || | | || | |||| |||| |||| | ||||| || |
Sbjct 49701 CGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTACCACCCTGATCGACATATCTGG 49757
Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989
| || ||| || || |||||||| ||||| ||||| | ||| || || || ||
Sbjct 49758 CAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAG 49817
Query 116990 GAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049
||| ||| | |||| | || ||||| || || || ||||| || ||| ||
Sbjct 49818 CAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCT 49877
Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109
| || || || ||| | | ||| || | ||||| || ||||| |||| ||||
Sbjct 49878 TGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCA 49937
Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTT 117168
| ||| | |||||| |||| || ||||| || ||||| |||||||| |||||
Sbjct 49938 TGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGTG 49996
Query 117169 GGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGG 117226
|| | || ||| ||| | | |||| ||||| | ||| ||||||| ||||
Sbjct 49997 GGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCT 50054
Query 117227 GAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286
|||||| || || ||||| | || || ||||| | ||||| || ||| || |
Sbjct 50055 CAATGTCATCTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAA 50114
Query 117287 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
| | ||||| ||| || ||||||| |||||| |||||||
Sbjct 50115 CAATCTTGCCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 50162
>seq1011
Length=119094
Score = 136 bits (150), Expect = 5e-27
Identities = 347/521 (67%), Gaps = 9/521 (2%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| |||||||||||||| |||||||| || || || ||| ||||||
Sbjct 29508 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 29449
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | |||||| || | ||| | || |||||||||
Sbjct 29448 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 29389
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699
||||| || || || |||| || |||| ||||||||| | ||| | | |
Sbjct 29388 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 29329
Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759
||||| || ||||| | ||||| || || || || | ||||| || || | |||
Sbjct 29328 CACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 29269
Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817
| || || | | ||| | || |||||||| | || ||||| || || || |
Sbjct 29268 AGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCT 29211
Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876
|| ||||| | | ||| || | ||| | ||||||| | || || ||| |||
Sbjct 29210 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 29152
Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936
|| ||||| || || | | ||||| ||||| ||||| || | |||
Sbjct 29151 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 29092
Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993
|| || |||||||| | ||||| | || || | ||||||| || | ||||||
Sbjct 29091 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 29032
Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||| |||||||| || ||||| | ||| || || |||||
Sbjct 29031 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613499117042640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |