Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 223 6e-53
seq160 131 3e-25
>seq1011
Length=119094
Score = 223 bits (246), Expect = 6e-53
Identities = 579/867 (67%), Gaps = 33/867 (4%)
Strand=Plus/Minus
Query 159628 CTTCTTGTATT--GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATT 159685
||||| ||| | ||||||| |||||| || |||||||||||||| | | || ||
Sbjct 29803 CTTCTGGTAGTCGGCGACACG--CTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATG 29746
Query 159686 GATTCCATGAACCCGAATGGGTTCTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGC 159744
|||||||| | || ||||| || || ||| |||| |||||||| |
Sbjct 29745 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTG-TAGATCTTCTCGTTGCCGAGAGCGAC 29687
Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCA 159803
|||| | ||| || ||||| |||||||| || | |||| | | |||| || || |
Sbjct 29686 AAGCAGACGGTCGGCAACAAACTCGATGTA-CTGCTTCATCAGGTTGGAGTTCATGCCGA 29628
Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863
|||| |||||| || || | || || |||| |||||| ||| || ||||| |
Sbjct 29627 GCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGA 29568
Query 159864 CAATCTGCGAGA-CACGTTCGTAC---CCCGG--CTTGCCCAAAATGTGGTCCTTAAACA 159917
|| | || ||| | | | | | ||| |||| | ||| ||
Sbjct 29567 TGATGTCACGGATCACCTCCTTGCTGGCACGGTTCTTGAGGTGAGAGTG---------CA 29517
Query 159918 GGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA 159977
| ||||| |||||||| |||||| |||||||| |||||||||| ||||||||| | |
Sbjct 29516 GCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGG 29457
Query 159978 TGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAA 160037
| || || ||||||| || ||| |||||||| || |||| ||||| |||||||| |
Sbjct 29456 TCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGA 29397
Query 160038 AAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGT 160097
| ||||| ||||| ||||| ||||| || || || | || |||| || | ||| |||
Sbjct 29396 AGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGT 29337
Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACG 160156
| ||| ||||| | ||||||| || |||||||| |||| |||| || ||| ||| | |
Sbjct 29336 CCTGGATCCACTTGATGGCCCAGTCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAATG 29278
Query 160157 GCGTTAAACA---ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213
||||| || | | ||| ||| ||| |||||||| || | || |||
Sbjct 29277 GCGTTGAAGAGGTAGCTGCGCTGGCTGTTC---TCCTTGATGTAGGTGTCGATGAGCAGG 29221
Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273
||||| | || | ||| | || || || ||||| ||| |||||| || |||
Sbjct 29220 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCC 29161
Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333
|| | ||| ||||| |||| | | |||| || | || || | || ||
Sbjct 29160 TCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCA 29101
Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393
| ||| |||||||| |||| | |||||||||||| | ||||||| | ||| || |
Sbjct 29100 GAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGG 29041
Query 160394 TTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGC 160452
|| | ||||| ||| || || | || || ||||| |||||| ||| |||| || ||
Sbjct 29040 TTGTTCCAGTCGTG-CAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGC 28982
Query 160453 CTGAGCAGTTTTGTACATGGCCCAGAT 160479
|| || | |||||||| ||||||
Sbjct 28981 CTCGGCCTTCTTGTACATTTGCCAGAT 28955
>seq160
Length=70483
Score = 131 bits (144), Expect = 3e-25
Identities = 350/530 (66%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943
||| ||||||||||||||||| || || || ||| || | ||||||| | |
Sbjct 48385 CAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAAT 48444
Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003
|||| || ||||||| |||||| |||||||| |||||| || || |||||||
Sbjct 48445 CTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGC 48504
Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063
| ||||| || ||||| | || ||| ||| ||||||||||| || |||||| |
Sbjct 48505 ACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTA 48564
Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122
| | | || | | || || | | | | || |||| | |||||||| || || |
Sbjct 48565 AAGGGCCTTGATATCTTCGGGGATGT-TGGGGATGTTCTGAATGGAGCCGTTCTCAGCAA 48623
Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182
| | | || || | | || ||| | ||| || ||| ||| | ||
Sbjct 48624 TGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCC 48683
Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242
|||||||| | ||| || || |||| || || | ||| | | | |||| ||||
Sbjct 48684 AGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGT 48743
Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302
| || ||||| |||||||||||| | |||||| | || ||||| || ||||| || |
Sbjct 48744 AGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGG 48803
Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAG 204361
| ||||||| | ||||||| ||||| | | || |||| ||| || ||| |||
Sbjct 48804 CGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA-TCTGCTCCTTGAGCGAGTCCCAC 48862
Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| || || ||| || || ||||||||||||| || | ||||||
Sbjct 48863 TCCCACAGGTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCC 48912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795144723830240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |