Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1011 223 6e-53 seq160 131 3e-25 >seq1011 Length=119094 Score = 223 bits (246), Expect = 6e-53 Identities = 579/867 (67%), Gaps = 33/867 (4%) Strand=Plus/Minus Query 159628 CTTCTTGTATT--GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATT 159685 ||||| ||| | ||||||| |||||| || |||||||||||||| | | || || Sbjct 29803 CTTCTGGTAGTCGGCGACACG--CTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATG 29746 Query 159686 GATTCCATGAACCCGAATGGGTTCTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGC 159744 |||||||| | || ||||| || || ||| |||| |||||||| | Sbjct 29745 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTG-TAGATCTTCTCGTTGCCGAGAGCGAC 29687 Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCA 159803 |||| | ||| || ||||| |||||||| || | |||| | | |||| || || | Sbjct 29686 AAGCAGACGGTCGGCAACAAACTCGATGTA-CTGCTTCATCAGGTTGGAGTTCATGCCGA 29628 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 |||| |||||| || || | || || |||| |||||| ||| || ||||| | Sbjct 29627 GCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGA 29568 Query 159864 CAATCTGCGAGA-CACGTTCGTAC---CCCGG--CTTGCCCAAAATGTGGTCCTTAAACA 159917 || | || ||| | | | | | ||| |||| | ||| || Sbjct 29567 TGATGTCACGGATCACCTCCTTGCTGGCACGGTTCTTGAGGTGAGAGTG---------CA 29517 Query 159918 GGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA 159977 | ||||| |||||||| |||||| |||||||| |||||||||| ||||||||| | | Sbjct 29516 GCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGG 29457 Query 159978 TGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAA 160037 | || || ||||||| || ||| |||||||| || |||| ||||| |||||||| | Sbjct 29456 TCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGA 29397 Query 160038 AAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGT 160097 | ||||| ||||| ||||| ||||| || || || | || |||| || | ||| ||| Sbjct 29396 AGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGT 29337 Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACG 160156 | ||| ||||| | ||||||| || |||||||| |||| |||| || ||| ||| | | Sbjct 29336 CCTGGATCCACTTGATGGCCCAGTCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAATG 29278 Query 160157 GCGTTAAACA---ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 ||||| || | | ||| ||| ||| |||||||| || | || ||| Sbjct 29277 GCGTTGAAGAGGTAGCTGCGCTGGCTGTTC---TCCTTGATGTAGGTGTCGATGAGCAGG 29221 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 ||||| | || | ||| | || || || ||||| ||| |||||| || ||| Sbjct 29220 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCC 29161 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 || | ||| ||||| |||| | | |||| || | || || | || || Sbjct 29160 TCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCA 29101 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393 | ||| |||||||| |||| | |||||||||||| | ||||||| | ||| || | Sbjct 29100 GAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGG 29041 Query 160394 TTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGC 160452 || | ||||| ||| || || | || || ||||| |||||| ||| |||| || || Sbjct 29040 TTGTTCCAGTCGTG-CAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGC 28982 Query 160453 CTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || | |||||||| |||||| Sbjct 28981 CTCGGCCTTCTTGTACATTTGCCAGAT 28955 >seq160 Length=70483 Score = 131 bits (144), Expect = 3e-25 Identities = 350/530 (66%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| || || || ||| || | ||||||| | | Sbjct 48385 CAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAAT 48444 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| || ||||||| |||||| |||||||| |||||| || || ||||||| Sbjct 48445 CTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGC 48504 Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 | ||||| || ||||| | || ||| ||| ||||||||||| || |||||| | Sbjct 48505 ACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTA 48564 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122 | | | || | | || || | | | | || |||| | |||||||| || || | Sbjct 48565 AAGGGCCTTGATATCTTCGGGGATGT-TGGGGATGTTCTGAATGGAGCCGTTCTCAGCAA 48623 Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182 | | | || || | | || ||| | ||| || ||| ||| | || Sbjct 48624 TGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCC 48683 Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242 |||||||| | ||| || || |||| || || | ||| | | | |||| |||| Sbjct 48684 AGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGT 48743 Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302 | || ||||| |||||||||||| | |||||| | || ||||| || ||||| || | Sbjct 48744 AGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGG 48803 Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAG 204361 | ||||||| | ||||||| ||||| | | || |||| ||| || ||| ||| Sbjct 48804 CGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA-TCTGCTCCTTGAGCGAGTCCCAC 48862 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || || ||| || || ||||||||||||| || | |||||| Sbjct 48863 TCCCACAGGTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCC 48912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144723830240