Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq434 136 9e-27
seq378 136 9e-27
seq422 86.0 1e-11
>seq434
Length=177494
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| |||||||| || |||||||| |||| ||||||||| | | ||
Sbjct 69292 CGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 69351
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| || |||||||| | |||||||||||||| ||| ||
Sbjct 69352 CGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCC 69411
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 69412 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 69471
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| |||||||| || || || ||||| ||
Sbjct 69472 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 69509
>seq378
Length=193057
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||||||||| || || |||||| || | ||||||||| ||||||
Sbjct 156633 CGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTG 156574
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || || ||||| ||||||||||| |||||| ||| ||
Sbjct 156573 CGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCC 156514
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||||||||||| ||| || |||| |||||||| || ||| || |||||
Sbjct 156513 TCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAAT 156454
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || || || || || ||
Sbjct 156453 GTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTG 156416
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| |||||||| || |||||||| |||| ||||||||| | || |||
Sbjct 156119 CGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 156060
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || ||||| || |||||||||||||| ||| ||| ||
Sbjct 156059 CGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCC 156000
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| |||| ||| || | | || || || |
Sbjct 155999 TCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGG 155940
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || |||||
Sbjct 155939 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 155902
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||||||||| |||||||| |||| ||||||||| | | || | |||||
Sbjct 156396 AGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 156337
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| || ||||||||||| ||| || || || |||
Sbjct 156336 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 156277
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||| || | || || || || | ||||| |||
Sbjct 156276 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 156217
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || ||
Sbjct 156216 TTTCCAGTGAGGGTCTTGAC 156197
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||| || | ||| || || |||||| || | ||||||||| ||| ||
Sbjct 156861 CGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTG 156802
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || |||||||||||||| || || ||||| | ||||||||||| ||| ||| ||
Sbjct 156801 CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCC 156742
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| |||||| | | ||| || || |
Sbjct 156741 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGG 156682
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| || || ||||||||
Sbjct 156681 GTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTG 156644
>seq422
Length=18081
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | ||||| || |||||||| || || ||||
Sbjct 4402 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 4343
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||||||||| ||| || || ||||| ||||| ||| || |
Sbjct 4342 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4283
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 4282 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4223
Query 199620 AA 199621
||
Sbjct 4222 AA 4221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178905679400618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |