Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq378 141 1e-28
seq422 129 7e-25
seq434 127 2e-24
>seq378
Length=193057
Score = 141 bits (156), Expect = 1e-28
Identities = 174/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||||| |||| |||| ||| |||||||| || || |||||
Sbjct 156874 TTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTA 156815
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| | ||||| |||| || |||||||| || || || |||||||||||||||||
Sbjct 156814 GTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTC 156755
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538
| || | || |||||||||| ||||| ||||| ||| | | | |||||| |
Sbjct 156754 AGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAG 156696
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||| || | ||||| || ||||| ||||| || ||||| || ||||||||
Sbjct 156695 ATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||| |||||||| |||||
Sbjct 156090 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 156031
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || |||||||||| |||||| ||| | |
Sbjct 156030 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 155971
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||| || || || || | |||||||| ||||| || || || || ||
Sbjct 155970 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 155911
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 155910 GAAGATTTGCAT 155899
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || || |||||||| || |||||
Sbjct 156376 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 156317
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | |||||| ||| |||||| ||||| |||
Sbjct 156316 GATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGT 156258
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || || || ||||| || | |||||||| || || || || || || |
Sbjct 156257 TGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGA 156198
Query 46581 C 46581
|
Sbjct 156197 C 156197
>seq422
Length=18081
Score = 129 bits (142), Expect = 7e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || |||||||||||||| || || |
Sbjct 4402 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 4343
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 4342 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4283
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 4282 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4223
Query 46584 A 46584
|
Sbjct 4222 A 4222
>seq434
Length=177494
Score = 127 bits (140), Expect = 2e-24
Identities = 160/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | ||| |||||| ||||| ||||||||||| || || || |
Sbjct 69298 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA 69357
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| || ||||| ||||| ||||||||||| | || | || |||||||
Sbjct 69358 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 69417
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | |||||
Sbjct 69418 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 69477
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 69478 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 69517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565230952984080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |