Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1011 268 9e-67 seq434 118 1e-21 seq378 118 1e-21 seq422 105 7e-18 >seq1011 Length=119094 Score = 268 bits (296), Expect = 9e-67 Identities = 566/830 (68%), Gaps = 27/830 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | |||||| | ||| || || ||||||||| Sbjct 29781 TTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTG 29722 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | |||||| ||| | |||||| || |||| ||||| | |||||| || ||| Sbjct 29721 GCAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CGACAAGCAGACGGTCGGCAACAAAC 29665 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798 |||||||| ||| ||| |||| | | || | || ||||| |||| || || || Sbjct 29664 TCGATGTACTGCTTCATCAGGTT--GGAGTTCATGCCGAGCAGGGCGCAGGGG-AGAGCC 29608 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 ||||| | || ||||| || ||| || ||||||| ||| || | | | || Sbjct 29607 TCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCC 29548 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| | || | | | || | || || ||| |||||||| |||| ||| Sbjct 29547 TTGCTGGCACGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCC 29488 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| |||||| || |||| || |||||||| || || || ||| Sbjct 29487 TCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTG 29428 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| ||| || || ||||||| ||||||||||| || || || Sbjct 29427 AGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCA 29368 Query 133039 ACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||||||||| | | || | | ||||| | |||| ||||| | ||||| |||| Sbjct 29367 ACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG--ATCCACTTGATGGCCCAGTCGG 29310 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | | ||| || || || || |||||||| || | | || | | || | Sbjct 29309 CCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGCTGCGCTGGCT 29252 Query 133157 AGGAACGC----ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 | | | | ||||||||||||||| || || | || ||||| | ||||||| Sbjct 29251 --GTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCC 29194 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || ||| || |||||||| ||||| || |||||| | ||| || || ||| Sbjct 29193 ATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAG 29134 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 ||||||||||| || |||||||| ||||| || |||||| || |||||||| | ||| Sbjct 29133 CGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGA 29074 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389 |||||| | ||||| ||||||| ||| | ||||||| || ||||||||| Sbjct 29073 GAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGAC 29014 Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | ||| ||| ||||||| || || |||||||| || |||||||| Sbjct 29013 AGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 28964 >seq434 Length=177494 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 69515 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 69456 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| |||||| | ||| Sbjct 69455 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 69396 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || |||||||| || | || |||||| ||||||| Sbjct 69395 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 69336 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || || |||| ||||| Sbjct 69335 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 69298 >seq378 Length=193057 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 155899 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 155958 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 155959 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 156018 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 156019 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 156078 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 156079 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 156113 Score = 118 bits (130), Expect = 1e-21 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || |||||| |||| || || | || Sbjct 156641 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 156700 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| ||||| | ||||| Sbjct 156701 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 156759 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || |||||||| |||| |||||| | | ||||||||| Sbjct 156760 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 156819 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| ||| || ||||| ||||| |||||| | | || |||| Sbjct 156820 CATTCAGAAGGAGAGC-ACACTGCACTTGGTTCTGCGTCTTCGTGGTGGCC 156869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| || || ||||||||| |||| || ||| | | || | | | Sbjct 156195 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 156254 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| || || ||||| || || | ||||| ||||| || Sbjct 156255 ACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGACTG 156313 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 156314 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 156373 Query 38433 GA 38434 || Sbjct 156374 GA 156375 >seq422 Length=18081 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 4222 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 4281 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 4282 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 4341 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 4342 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 4401 Query 38433 G 38433 | Sbjct 4402 G 4402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166210223360