Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq378 89.7 2e-12
>seq378
Length=193057
Score = 89.7 bits (98), Expect = 2e-12
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||| || || || || || | || |||||||||||
Sbjct 156413 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 156472
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || ||| ||||| || ||||| || |||||||| |||||
Sbjct 156473 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAG 156532
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || || | || || || ||||| || || | |||||| || || ||
Sbjct 156533 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACTACAAC 156592
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| |||||||||
Sbjct 156593 ATTCAGAAGGAGAGCACACTTCAC 156616
Score = 84.2 bits (92), Expect = 9e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || || || || || || || || || || ||
Sbjct 155899 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 155958
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || || || || ||||| || ||||||||||| ||
Sbjct 155959 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 156018
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | |||||| | || || ||||| || ||||| ||||| || | || || ||
Sbjct 156019 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 156078
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || || |||
Sbjct 156079 ATCCAGAAGGAGTCCACCCTCCAC 156102
Score = 84.2 bits (92), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||||||||| || ||||| || || || || || || || || ||||| ||
Sbjct 156641 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 156700
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | || || ||||| || ||||| || ||||||||||| ||
Sbjct 156701 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 156760
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || || || || | || || || || ||||| || | || ||| || || ||
Sbjct 156761 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 156820
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| ||||| ||||| ||
Sbjct 156821 ATTCAGAAGGAGAGCACACTGCACTTGGT 156849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975691719157832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |