Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq74 241 2e-58
seq98 136 5e-27
seq160 105 8e-18
>seq74
Length=105533
Score = 241 bits (266), Expect = 2e-58
Identities = 468/689 (68%), Gaps = 8/689 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||||||||||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 27313 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 27372
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || ||||||||||| || || || ||||| |||
Sbjct 27373 TCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 27432
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || ||||| || || ||||| ||||| || || || || || ||
Sbjct 27433 TTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTGGGCTCG 27492
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| || || ||||| | || || || || || || ||
Sbjct 27493 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 27552
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || | ||| |||| |||| | | |||||
Sbjct 27553 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 27612
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || | ||| || || ||||| || | |
Sbjct 27613 TAGGACTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 27672
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875
|| ||| | || || || || || || || | | ||| || | ||| | |
Sbjct 27673 AAGGTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 27728
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
|| | ||| | | | | ||||| || | ||||||| ||| | |||||| |
Sbjct 27729 GACGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 27788
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
||| || | ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 27789 TCCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 27848
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
||||| || ||||| ||||| || | || || || || ||| |||| ||||||||
Sbjct 27849 GGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 27905
Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
||| || || |||||||| || || || || ||||| | | ||| ||||||||
Sbjct 27906 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 27965
Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144
|| ||||| || || | || |||||||
Sbjct 27966 GGAGTACGTAGTACCCAGGTCGATACCGA 27994
>seq98
Length=95448
Score = 136 bits (150), Expect = 5e-27
Identities = 361/545 (66%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| |||||||| |||| | |||||| | || ||| | | ||
Sbjct 73353 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAATCCTCACCCTCGAAGAGAGAG 73294
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | ||| || ||||| || ||||| || |
Sbjct 73293 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 73236
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418
| || || | | || || ||||| |||| | | || || ||||| || |
Sbjct 73235 CAGTGCGGAGTCTTCGGAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 73179
Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
| | ||||| | | |||| || || || | | || || || | |||||||||
Sbjct 73178 GAGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 73120
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || ||||| || ||||| |||| ||| || | ||||| | || ||
Sbjct 73119 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 73060
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597
||||| || ||||||||||| || || | || || ||||| || | ||| | ||
Sbjct 73059 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 73000
Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| |||||||| || || || || || || || ||||| || |
Sbjct 72999 CCAGCACCCAGACCGTAGGCGATAGCAGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 72940
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||||||||| | | ||||| || || || || || || ||||| ||||||
Sbjct 72939 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 72880
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| ||||| || | ||| || | | || ||||| ||||| | | || || || ||
Sbjct 72879 GCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 72820
Query 7775 TTCAT 7779
|||||
Sbjct 72819 TTCAT 72815
>seq160
Length=70483
Score = 105 bits (116), Expect = 8e-18
Identities = 339/521 (65%), Gaps = 15/521 (3%)
Strand=Plus/Plus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||| | ||| |||||||| | || || | ||| ||| |
Sbjct 49577 TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGG 49636
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
||||||| | || || ||| || | || || || || | | || ||||||||
Sbjct 49637 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAG 49696
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | |||| |||| | || | ||||| || | |||| |||||||
Sbjct 49697 GGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATAT 49753
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
|| || || ||| ||||||| | ||| ||||||||||| | || || || || ||
Sbjct 49754 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTG 49813
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
||| ||| | || | ||||| | ||| |||| || || ||||| ||||||
Sbjct 49814 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 49873
Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912
||| || |||||| || | || || || ||||| ||||| || || |||
Sbjct 49874 ATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCC 49933
Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAG 105971
|| | | | || ||| || || |||| || || ||| || ||||| || ||||||||
Sbjct 49934 TTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAG 49992
Query 105972 AGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACG 106029
|| || | ||||| |||| || ||| | || | | |||||| ||||||||
Sbjct 49993 GGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGACA 50050
Query 106030 TGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070
| ||||| || | ||| ||||||| || || |||||
Sbjct 50051 CGCTCAATGTCATCTCCCCAGATACCAACAGACACTCGCAT 50091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635124432125360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |