Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq74 241 2e-58 seq98 136 5e-27 seq160 105 8e-18 >seq74 Length=105533 Score = 241 bits (266), Expect = 2e-58 Identities = 468/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 27313 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 27372 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 27373 TCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 27432 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| || || ||||| ||||| || || || || || || Sbjct 27433 TTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTGGGCTCG 27492 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 27493 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 27552 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 27553 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 27612 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| || || ||||| || | | Sbjct 27613 TAGGACTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 27672 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || || || || | | ||| || | ||| | | Sbjct 27673 AAGGTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 27728 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || | ||| | | | | ||||| || | ||||||| ||| | |||||| | Sbjct 27729 GACGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 27788 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||| || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 27789 TCCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 27848 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| || ||||| ||||| || | || || || || ||| |||| |||||||| Sbjct 27849 GGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 27905 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 27906 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 27965 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 27966 GGAGTACGTAGTACCCAGGTCGATACCGA 27994 >seq98 Length=95448 Score = 136 bits (150), Expect = 5e-27 Identities = 361/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | |||||| | || ||| | | || Sbjct 73353 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAATCCTCACCCTCGAAGAGAGAG 73294 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| || ||||| || ||||| || | Sbjct 73293 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 73236 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | || || ||||| |||| | | || || ||||| || | Sbjct 73235 CAGTGCGGAGTCTTCGGAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 73179 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||| | | |||| || || || | | || || || | ||||||||| Sbjct 73178 GAGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 73120 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| |||| ||| || | ||||| | || || Sbjct 73119 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 73060 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||||||||| || || | || || ||||| || | ||| | || Sbjct 73059 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 73000 Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| |||||||| || || || || || || || ||||| || | Sbjct 72999 CCAGCACCCAGACCGTAGGCGATAGCAGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 72940 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || || || || || ||||| |||||| Sbjct 72939 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 72880 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 72879 GCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 72820 Query 7775 TTCAT 7779 ||||| Sbjct 72819 TTCAT 72815 >seq160 Length=70483 Score = 105 bits (116), Expect = 8e-18 Identities = 339/521 (65%), Gaps = 15/521 (3%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||| | ||| |||||||| | || || | ||| ||| | Sbjct 49577 TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGG 49636 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | || |||||||| Sbjct 49637 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAG 49696 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| | || | ||||| || | |||| ||||||| Sbjct 49697 GGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATAT 49753 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| ||||||| | ||| ||||||||||| | || || || || || Sbjct 49754 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTG 49813 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 ||| ||| | || | ||||| | ||| |||| || || ||||| |||||| Sbjct 49814 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 49873 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || |||||| || | || || || ||||| ||||| || || ||| Sbjct 49874 ATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCC 49933 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAG 105971 || | | | || ||| || || |||| || || ||| || ||||| || |||||||| Sbjct 49934 TTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAG 49992 Query 105972 AGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACG 106029 || || | ||||| |||| || ||| | || | | |||||| |||||||| Sbjct 49993 GGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGACA 50050 Query 106030 TGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 | ||||| || | ||| ||||||| || || ||||| Sbjct 50051 CGCTCAATGTCATCTCCCCAGATACCAACAGACACTCGCAT 50091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124432125360