Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq160 277 2e-69 seq1011 152 6e-32 seq1 87.8 2e-12 >seq160 Length=70483 Score = 277 bits (306), Expect = 2e-69 Identities = 934/1433 (65%), Gaps = 31/1433 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||||| || | | |||||| || || || ||||| ||| Sbjct 50106 CCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGACATTGAGCGTGTC 50047 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||||||| || ||||| | | |||| ||| || | || ||||| ||| Sbjct 50046 CTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTC 49987 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || |||| ||||| || ||| | | | | ||||| || Sbjct 49986 AACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATGAC 49927 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || || | |||||| | |||||| || || ||| ||||||| Sbjct 49926 AGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGT 49867 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | |||| | ||| ||| || || || Sbjct 49866 GGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAAC 49807 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||| Sbjct 49806 GGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTC 49747 Query 111972 AACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCAC 112025 | || | ||| | |||| | || | || |||| || ||||| |||||| Sbjct 49746 GATCAGGGTGG---TAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCAC 49690 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGT 112083 || || || | ||||||||||| | || ||||| || | || |||| |||| | Sbjct 49689 GCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 49630 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 || || | ||| |||||||||||||| ||||||||||||||| | |||||| ||| Sbjct 49629 --CGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGA 49572 Query 112144 G--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 ||| | ||| | ||| | || || || || || || || || | || ||| || Sbjct 49571 ACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATG 49515 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGAC 112258 | |||||||| || || | || ||||||||| | || | || ||| | ||| Sbjct 49514 GC-GAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAA-GAC 49457 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | | ||| | || | ||||| | | || | || | || ||||||||||||| | Sbjct 49456 CATTCGCGCT-CAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAACC 49398 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| || ||||| |||| ||||| || || ||||| |||| | Sbjct 49397 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCA 49338 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || ||||||||||| || || ||| | || | | | ||| ||| |||| Sbjct 49337 TCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGCTG 49278 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 112496 | || ||||| || || | || ||||| ||||| || | | | || ||| | | Sbjct 49277 TTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTGCTA 49220 Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | | || ||||| |||||||| || || ||||| |||| | || Sbjct 49219 CGACTTTAAGAAGCTCCATGAAGTTACTAAGGTGGTTGTCCGCAACCTTAACAAGATCAT 49160 Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 |||| || ||||| || || || || || || ||| | ||||| || || Sbjct 49159 TGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCCAT 49100 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674 |||| | |||||||| ||||| || || | ||| || || || ||| | ||||| | Sbjct 49099 TGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTG-CGCATGCCCTTTGAGT 49041 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 | ||| || || | || || || ||||||||||| || ||||| || || | Sbjct 49040 CTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCTAG 48981 Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 |||| | |||| | || |||| || ||||| |||||| | || |||| || || | Sbjct 48980 AGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTATGAATCATTCAAGGGATCACCTG 48921 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854 | || | || | || ||||| || |||||||| | || || | | || | Sbjct 48920 CATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGGAGT 48861 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||||| | |||||||| | ||||||||| | ||| || ||||| | | | || | Sbjct 48860 GGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGCCC 48801 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| ||| || | || || |||| || || || ||||| || ||||||| Sbjct 48800 CTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACA 48741 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 | | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 48740 CCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 48688 >seq1011 Length=119094 Score = 152 bits (168), Expect = 6e-32 Identities = 355/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 28991 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 29050 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 29051 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 29110 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 29111 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 29169 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 29170 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 29228 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 29229 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 29286 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 29287 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 29346 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 29347 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 29405 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 29406 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 29465 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 29466 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 29508 >seq1 Length=676508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/261 (69%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || || || || |||||||||| |||||| ||| ||| | || | | | || | Sbjct 641814 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 641755 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || | |||||| | ||||||||||||||||||||||| || | | || || Sbjct 641754 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 641695 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 641694 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 641636 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 16300 ||||| || || || | ||||||||| |||||||| || || |||| |||| | Sbjct 641635 TCCTGGTGGGCCGGCAAGAATGGCACCTCGAGGAATCTTTGCACCCAGCTTCTCAAACT- 641577 Query 16301 TCTCTCAGGTTGCTT-AAGAA 16320 | ||||| ||||| ||||| Sbjct 641576 --TTTCAGGCTGCTTCAAGAA 641558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734221718880