Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq160 277 2e-69
seq1011 152 6e-32
seq1 87.8 2e-12
>seq160
Length=70483
Score = 277 bits (306), Expect = 2e-69
Identities = 934/1433 (65%), Gaps = 31/1433 (2%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|||||| ||||| ||||||| || | | |||||| || || || ||||| |||
Sbjct 50106 CCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGACATTGAGCGTGTC 50047
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
||||||||||| || ||||| | | |||| ||| || | || ||||| |||
Sbjct 50046 CTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTC 49987
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| ||||| || |||| ||||| || ||| | | | | ||||| ||
Sbjct 49986 AACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATGAC 49927
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
||| | || || || | |||||| | |||||| || || ||| |||||||
Sbjct 49926 AGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGT 49867
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|||||||| || || |||| || | |||| | ||| ||| || || ||
Sbjct 49866 GGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAAC 49807
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||||||||||| |||||||| || || ||| ||| || | |||||
Sbjct 49806 GGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTC 49747
Query 111972 AACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCAC 112025
| || | ||| | |||| | || | || |||| || ||||| ||||||
Sbjct 49746 GATCAGGGTGG---TAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCAC 49690
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGT 112083
|| || || | ||||||||||| | || ||||| || | || |||| |||| |
Sbjct 49689 GCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 49630
Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143
|| || | ||| |||||||||||||| ||||||||||||||| | |||||| |||
Sbjct 49629 --CGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGA 49572
Query 112144 G--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTG 112199
||| | ||| | ||| | || || || || || || || || | || ||| ||
Sbjct 49571 ACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATG 49515
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGAC 112258
| |||||||| || || | || ||||||||| | || | || ||| | |||
Sbjct 49514 GC-GAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAA-GAC 49457
Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
| | ||| | || | ||||| | | || | || | || ||||||||||||| |
Sbjct 49456 CATTCGCGCT-CAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAACC 49398
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||| ||||| || ||||| |||| ||||| || || ||||| |||| |
Sbjct 49397 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCA 49338
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
|| || ||||||||||| || || ||| | || | | | ||| ||| ||||
Sbjct 49337 TCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGCTG 49278
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 112496
| || ||||| || || | || ||||| ||||| || | | | || ||| | |
Sbjct 49277 TTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTGCTA 49220
Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555
|| | | | || ||||| |||||||| || || ||||| |||| | ||
Sbjct 49219 CGACTTTAAGAAGCTCCATGAAGTTACTAAGGTGGTTGTCCGCAACCTTAACAAGATCAT 49160
Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615
|||| || ||||| || || || || || || ||| | ||||| || ||
Sbjct 49159 TGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCCAT 49100
Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674
|||| | |||||||| ||||| || || | ||| || || || ||| | ||||| |
Sbjct 49099 TGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTG-CGCATGCCCTTTGAGT 49041
Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734
| ||| || || | || || || ||||||||||| || ||||| || || |
Sbjct 49040 CTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCTAG 48981
Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794
|||| | |||| | || |||| || ||||| |||||| | || |||| || || |
Sbjct 48980 AGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTATGAATCATTCAAGGGATCACCTG 48921
Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854
| || | || | || ||||| || |||||||| | || || | | || |
Sbjct 48920 CATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGGAGT 48861
Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914
||||| | |||||||| | ||||||||| | ||| || ||||| | | | || |
Sbjct 48860 GGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGCCC 48801
Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974
| |||||||| ||| || | || || |||| || || || ||||| || |||||||
Sbjct 48800 CTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACA 48741
Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027
| | |||||||| | | || | ||| || || ||||| | ||||||||
Sbjct 48740 CCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 48688
>seq1011
Length=119094
Score = 152 bits (168), Expect = 6e-32
Identities = 355/523 (68%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873
||||| || |||||| | ||||| || |||||| || |||| ||||| | | | ||
Sbjct 28991 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 29050
Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933
|| | || ||| | ||||| |||||||||| |||||||| | || ||||| |||
Sbjct 29051 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 29110
Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992
|| ||||| | | ||| | ||||| || |||| | || || |||
Sbjct 29111 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 29169
Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051
||||| | | || | |||| ||| | | | || ||||| ||| ||||
Sbjct 29170 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 29228
Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109
| |||| || || ||||| | | | | | ||| | ||||| | ||||| | ||
Sbjct 29229 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 29286
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168
|||| || |||| ||||| || || ||||| || |||||| | | |||| | |
Sbjct 29287 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 29346
Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228
||||||||| |||| || | || ||||| || ||||||||||||||| |||
Sbjct 29347 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 29405
Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288
|||| | | || | |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 29406 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 29465
Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 29466 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 29508
>seq1
Length=676508
Score = 87.8 bits (96), Expect = 2e-12
Identities = 180/261 (69%), Gaps = 9/261 (3%)
Strand=Plus/Minus
Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124
|| || || || |||||||||| |||||| ||| ||| | || | | | || |
Sbjct 641814 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 641755
Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183
|| | |||||| | ||||||||||||||||||||||| || | | || ||
Sbjct 641754 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 641695
Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243
|| | ||| || || ||| || || ||| | || ||||||||||||||| || ||
Sbjct 641694 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 641636
Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 16300
||||| || || || | ||||||||| |||||||| || || |||| |||| |
Sbjct 641635 TCCTGGTGGGCCGGCAAGAATGGCACCTCGAGGAATCTTTGCACCCAGCTTCTCAAACT- 641577
Query 16301 TCTCTCAGGTTGCTT-AAGAA 16320
| ||||| ||||| |||||
Sbjct 641576 --TTTCAGGCTGCTTCAAGAA 641558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620734221718880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |