Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq160 250 3e-61
seq1011 87.8 2e-12
seq911 86.0 7e-12
>seq160
Length=70483
Score = 250 bits (276), Expect = 3e-61
Identities = 1034/1606 (64%), Gaps = 65/1606 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| |||||||||||||||||| | | |||
Sbjct 48475 GTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGG-----ACA 48529
Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614
||| | ||| ||| |||||||| |||||||| | ||||||||| ||||| |||
Sbjct 48530 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATG 48589
Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCA-CCATGA---GATCCTTCATCTCTTT 109670
| |||||| ||||| ||||| | ||| | |||| | | |||||| | |
Sbjct 48590 TTGGGGATGTTCTGAATGGAGCC----GTTCTCAGCAATGATACGGTTCTTCATGGCATC 48645
Query 109671 CGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTC 109730
|||||||| ||| | || || | | ||| |||||| || || ||
Sbjct 48646 GGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTC 48705
Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790
|| ||||| ||||| |||||||||| | |||||||| ||||| ||||| |||||
Sbjct 48706 GCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTT 48765
Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850
||| || || || | || || || ||||| || || | ||| | ||||| ||
Sbjct 48766 GCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGT 48825
Query 109851 ACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA-- 109908
||| | | ||| | | |||| | | |||||| || |||| | | |
Sbjct 48826 ACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGA 48876
Query 109909 -GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAA 109967
| || |||||||||| || ||| || | ||||| | ||||| || ||||||||
Sbjct 48877 GGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAA 48936
Query 109968 ACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATA 110027
|| || | ||||| |||| ||| | ||| ||||||||||| ||||| || ||
Sbjct 48937 TGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTA 48996
Query 110028 CATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACC 110087
|| |||||||| || || |||| |||| ||| | | || ||||| | |
Sbjct 48997 GATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCA-TGC 49055
Query 110088 ACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCA 110146
|| || || || | || || |||||||| ||||| | ||||||||| || || ||
Sbjct 49056 GCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCA 49115
Query 110147 TGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGAT 110206
|||| | || || | || ||||| |||| || |||| | || || |
Sbjct 49116 TGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGT 49175
Query 110207 TCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTC 110264
| || ||| || | ||||||||| || | | ||| | | |||| |
Sbjct 49176 TGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG--TT 49233
Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324
| | |||||| ||||| || | ||| || || ||||| |||| | |||||||
Sbjct 49234 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGG 49293
Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384
| | ||| || | || || || || | |||||| || ||| |||| ||||||
Sbjct 49294 GGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 49353
Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444
||| || ||| |||||| |||||||| ||||||||| | ||| ||||||| || ||
Sbjct 49354 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 49413
Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGA- 110500
||| | || | |||| | ||| | | || | ||| | | | ||||| || |
Sbjct 49414 CTGGGCCTCCAAGATGGAATACCACAGCTTCTG-AGCGCGAATGGTCTTGCG---GCCAC 49469
Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560
| || |||| ||||||||| ||||| |||| || |||| || || |||| ||
Sbjct 49470 GTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAA 49529
Query 110561 GACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCT 110617
| || || || || ||| || | ||| | ||| |||| || |||||| | ||
Sbjct 49530 G-GCCAGGGCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCT 49586
Query 110618 TCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCAT 110677
||||||| || || |||||||| | || ||| | |||||| || ||||||| |
Sbjct 49587 TCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCT 49646
Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737
|| ||||| ||| || || | || || | || || | |||||| || ||||| |
Sbjct 49647 TGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGT 49706
Query 110738 AGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGG 110791
||| || | || || | |||| ||| |||| | ||||| | || |||
Sbjct 49707 AGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGT 49763
Query 110792 CATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTC 110851
||||| || | ||||| |||||||| || | || ||| || || || |||
Sbjct 49764 TGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGT 49823
Query 110852 TGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAA 110911
|| ||||||| ||| ||||| | || || |||||||| ||| ||| ||
Sbjct 49824 AAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAA 49883
Query 110912 TTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCA 110970
| |||||| ||| | || || |||| ||||| || || || |||| || |
Sbjct 49884 TCATGGCACACGTCT-TCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCG 49942
Query 110971 ATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTC 111030
| | ||||| || |||| ||| | | || || || || ||||| || || || |
Sbjct 49943 ACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAG 50002
Query 111031 GCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074
||||| ||| ||| |||| ||||| ||||||||| || ||
Sbjct 50003 GCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 50046
>seq1011
Length=119094
Score = 87.8 bits (96), Expect = 2e-12
Identities = 343/525 (65%), Gaps = 16/525 (3%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| || ||| || ||
Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| || ||||||||
Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| || ||| || || | || |||| || ||||| ||| |||||| ||
Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGA 29331
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730
|||||||| ||||||| |||||| ||||| || | || | ||||| | ||
Sbjct 29330 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 29271
Query 119731 A-AAGTTGCTTC-TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788
| | || ||| | | | | | ||||| || || | || ||||| ||||||||
Sbjct 29270 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 29213
Query 119789 CTCACCATGAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAA 119847
||| || | | | ||| || ||| || | || || | ||||| |||| |
Sbjct 29212 CTCGGAGTGGATGTTCTCCATCATG-ATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGA 29154
Query 119848 TTTGCACTTCGTCAGCAAAATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906
| || || ||| | || || | | | | || || ||||| ||||| || |
Sbjct 29153 TCTGGACCTCG-CCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 29095
Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTC 119963
|| ||||| || | ||||| ||||| | || || | |||||| || ||| |||
Sbjct 29094 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 29035
Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008
||||||| || ||| || |||| || | |||||| || ||||||
Sbjct 29034 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAG 28990
>seq911
Length=127146
Score = 86.0 bits (94), Expect = 7e-12
Identities = 160/230 (70%), Gaps = 10/230 (4%)
Strand=Plus/Plus
Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595
||||| |||||| || || | |||||| | ||| | ||||| |||| |||||||
Sbjct 19038 GCATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTGATG 19097
Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTT-CAGCGAGGGAAACTTC 167654
||||| || ||| | |||| | ||||| | ||| |||| | || || || ||||
Sbjct 19098 TTATTGGATCCCACAAAATCTTGAGCCAAGCCAATGATGGTTTGCTGC-AGTGAGGCTTC 19156
Query 167655 GCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTC 167714
||||||||||| ||| || | ||| ||||| | |||| || |||||| | ||
Sbjct 19157 ACCGTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCT---TTTC 19213
Query 167715 ATCTTTGA----GATTCTTTTGGAAACATGAATACATAACCTTGCGTTGA 167760
|| |||| | |||| || |||||||| || | ||||||||| |||
Sbjct 19214 GTCCTTGACCACGTTTCTCTT-GAAACATGCGTAGAGAACCTTGCGCTGA 19262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588968240241200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |