Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq160 250 3e-61 seq1011 87.8 2e-12 seq911 86.0 7e-12 >seq160 Length=70483 Score = 250 bits (276), Expect = 3e-61 Identities = 1034/1606 (64%), Gaps = 65/1606 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| |||||||||||||||||| | | ||| Sbjct 48475 GTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGG-----ACA 48529 Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| | ||| ||| |||||||| |||||||| | ||||||||| ||||| ||| Sbjct 48530 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATG 48589 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCA-CCATGA---GATCCTTCATCTCTTT 109670 | |||||| ||||| ||||| | ||| | |||| | | |||||| | | Sbjct 48590 TTGGGGATGTTCTGAATGGAGCC----GTTCTCAGCAATGATACGGTTCTTCATGGCATC 48645 Query 109671 CGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTC 109730 |||||||| ||| | || || | | ||| |||||| || || || Sbjct 48646 GGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTC 48705 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 || ||||| ||||| |||||||||| | |||||||| ||||| ||||| ||||| Sbjct 48706 GCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTT 48765 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 ||| || || || | || || || ||||| || || | ||| | ||||| || Sbjct 48766 GCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGT 48825 Query 109851 ACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA-- 109908 ||| | | ||| | | |||| | | |||||| || |||| | | | Sbjct 48826 ACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGA 48876 Query 109909 -GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAA 109967 | || |||||||||| || ||| || | ||||| | ||||| || |||||||| Sbjct 48877 GGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAA 48936 Query 109968 ACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATA 110027 || || | ||||| |||| ||| | ||| ||||||||||| ||||| || || Sbjct 48937 TGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTA 48996 Query 110028 CATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACC 110087 || |||||||| || || |||| |||| ||| | | || ||||| | | Sbjct 48997 GATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCA-TGC 49055 Query 110088 ACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCA 110146 || || || || | || || |||||||| ||||| | ||||||||| || || || Sbjct 49056 GCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCA 49115 Query 110147 TGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGAT 110206 |||| | || || | || ||||| |||| || |||| | || || | Sbjct 49116 TGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGT 49175 Query 110207 TCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTC 110264 | || ||| || | ||||||||| || | | ||| | | |||| | Sbjct 49176 TGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG--TT 49233 Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 | | |||||| ||||| || | ||| || || ||||| |||| | ||||||| Sbjct 49234 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGG 49293 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || || || || | |||||| || ||| |||| |||||| Sbjct 49294 GGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 49353 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || ||| |||||| |||||||| ||||||||| | ||| ||||||| || || Sbjct 49354 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 49413 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGA- 110500 ||| | || | |||| | ||| | | || | ||| | | | ||||| || | Sbjct 49414 CTGGGCCTCCAAGATGGAATACCACAGCTTCTG-AGCGCGAATGGTCTTGCG---GCCAC 49469 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || |||| ||||||||| ||||| |||| || |||| || || |||| || Sbjct 49470 GTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAA 49529 Query 110561 GACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCT 110617 | || || || || ||| || | ||| | ||| |||| || |||||| | || Sbjct 49530 G-GCCAGGGCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCT 49586 Query 110618 TCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCAT 110677 ||||||| || || |||||||| | || ||| | |||||| || ||||||| | Sbjct 49587 TCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCT 49646 Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737 || ||||| ||| || || | || || | || || | |||||| || ||||| | Sbjct 49647 TGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGT 49706 Query 110738 AGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGG 110791 ||| || | || || | |||| ||| |||| | ||||| | || ||| Sbjct 49707 AGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGT 49763 Query 110792 CATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTC 110851 ||||| || | ||||| |||||||| || | || ||| || || || ||| Sbjct 49764 TGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGT 49823 Query 110852 TGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAA 110911 || ||||||| ||| ||||| | || || |||||||| ||| ||| || Sbjct 49824 AAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAA 49883 Query 110912 TTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCA 110970 | |||||| ||| | || || |||| ||||| || || || |||| || | Sbjct 49884 TCATGGCACACGTCT-TCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCG 49942 Query 110971 ATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTC 111030 | | ||||| || |||| ||| | | || || || || ||||| || || || | Sbjct 49943 ACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAG 50002 Query 111031 GCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 ||||| ||| ||| |||| ||||| ||||||||| || || Sbjct 50003 GCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 50046 >seq1011 Length=119094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 343/525 (65%), Gaps = 16/525 (3%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| || ||| || || Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| || |||||||| Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || ||| || || | || |||| || ||||| ||| |||||| || Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGA 29331 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 |||||||| ||||||| |||||| ||||| || | || | ||||| | || Sbjct 29330 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 29271 Query 119731 A-AAGTTGCTTC-TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || ||| | | | | | ||||| || || | || ||||| |||||||| Sbjct 29270 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 29213 Query 119789 CTCACCATGAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAA 119847 ||| || | | | ||| || ||| || | || || | ||||| |||| | Sbjct 29212 CTCGGAGTGGATGTTCTCCATCATG-ATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGA 29154 Query 119848 TTTGCACTTCGTCAGCAAAATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906 | || || ||| | || || | | | | || || ||||| ||||| || | Sbjct 29153 TCTGGACCTCG-CCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 29095 Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTC 119963 || ||||| || | ||||| ||||| | || || | |||||| || ||| ||| Sbjct 29094 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 29035 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 ||||||| || ||| || |||| || | |||||| || |||||| Sbjct 29034 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAG 28990 >seq911 Length=127146 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| |||||| || || | |||||| | ||| | ||||| |||| ||||||| Sbjct 19038 GCATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTGATG 19097 Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTT-CAGCGAGGGAAACTTC 167654 ||||| || ||| | |||| | ||||| | ||| |||| | || || || |||| Sbjct 19098 TTATTGGATCCCACAAAATCTTGAGCCAAGCCAATGATGGTTTGCTGC-AGTGAGGCTTC 19156 Query 167655 GCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTC 167714 ||||||||||| ||| || | ||| ||||| | |||| || |||||| | || Sbjct 19157 ACCGTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCT---TTTC 19213 Query 167715 ATCTTTGA----GATTCTTTTGGAAACATGAATACATAACCTTGCGTTGA 167760 || |||| | |||| || |||||||| || | ||||||||| ||| Sbjct 19214 GTCCTTGACCACGTTTCTCTT-GAAACATGCGTAGAGAACCTTGCGCTGA 19262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968240241200