Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq378 149 1e-30
seq434 147 5e-30
seq422 111 3e-19
seq160 95.1 3e-14
>seq378
Length=193057
Score = 149 bits (164), Expect = 1e-30
Identities = 163/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986
|| ||| | ||| || ||| ||| || ||||| ||||| ||| |||| || | || |
Sbjct 156853 CAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCGT 156795
Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046
|||| ||||||||||| || ||||| | || || ||||| ||||||||||| || ||||
Sbjct 156794 CTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGT 156735
Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106
| ||||| || ||||||||| || |||||||| ||| |||||| || ||||| | |
Sbjct 156734 CCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTG 156675
Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| || |||| ||| || ||||| | ||||||
Sbjct 156674 TCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
Score = 138 bits (152), Expect = 3e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| || || || ||||| |||| || |||| ||||| ||
Sbjct 156393 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 156334
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| ||||| || ||||| ||||| || || || || || ||
Sbjct 156333 AGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 156274
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || ||||| || || ||||| || ||||| | ||||||
Sbjct 156273 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTT 156214
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 156213 CCAGTGAGGGTCTTGACGA 156195
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| ||||||| ||||| |||
Sbjct 156107 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 156048
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || ||||| || || || || ||||| ||||||||||| || ||||| ||
Sbjct 156047 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 155988
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || ||||| || ||| || || || ||||| | |||||
Sbjct 155987 ATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 155928
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 155927 CCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| ||| ||| || ||||| ||||| ||| | ||| | || || ||
Sbjct 156621 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCA 156562
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || |||||||| || || || || |||||||| || || ||||| |||
Sbjct 156561 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 156502
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| |||||| || || |||||||| || ||| || || | || | |||||
Sbjct 156501 ATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTG 156442
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 156441 CCGGTCAACGTCTTGACGAAGATCTGCAT 156413
>seq434
Length=177494
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| |||| || |||| ||||| ||
Sbjct 69304 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 69363
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| | ||| || ||||| || |||||||| || ||||| ||
Sbjct 69364 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 69423
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| ||| ||||| |||||||| | ||||||
Sbjct 69424 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 69483
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 69484 CCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
>seq422
Length=18081
Score = 111 bits (122), Expect = 3e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||| || | ||||| ||||||||||| || || |||||
Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||| || ||||| || |||||||| || ||||| || || || |||||| || ||
Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || || || |||||||| | ||||| || |||| || || |||||
Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4222
>seq160
Length=70483
Score = 95.1 bits (104), Expect = 3e-14
Identities = 183/270 (68%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658
|||||| | ||||||| ||||||||| | || | | || ||| |||| || | |
Sbjct 49610 TCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGGACTGGACGCTCATGT 49551
Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718
| ||||| ||| ||||| |||| ||| ||||| ||||||||| || | ||||
Sbjct 49550 GCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAGTTCGAGGCTTTGTATG 49491
Query 160719 AAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATC 160778
| | ||||| || |||||| | | | ||| | | || || | |||||| ||
Sbjct 49490 AGAAGTACGAGAAGGAGGGACGTGGCCGCAAGACCATTCGCGCTCAGAAGCTGTGGTATT 49431
Query 160779 ACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT 160838
|||| | | ||||| |||| |||| ||||| || |||||||||||| |
Sbjct 49430 CCATCTTGGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCA 49371
Query 160839 GTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
|||||||| |||||||||||| | ||||
Sbjct 49370 ACCGCAAGAGCAACCAGAAGAACCTGGGAA 49341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109466617144418
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |