Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq378 96.9 2e-15
seq434 89.7 3e-13
seq422 89.7 3e-13
>seq378
Length=193057
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827
|| ||||||||| | |||||| || ||||||||||| ||||| | |||| | || | |
Sbjct 156853 CAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGT 156795
Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887
| |||||||| || || ||||| || | || |||||||| | || | ||||||||||
Sbjct 156794 CTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGT 156735
Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
| |||||| |||||| | || | || | || || |||| ||| || |
Sbjct 156734 CCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTG 156675
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || || || |||||||| || || || ||||||
Sbjct 156674 TCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 156640
>seq434
Length=177494
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| |||| |||| |||||||| || || || ||
Sbjct 69322 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 69381
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||| |||||||| | || | ||||||||||| ||||| ||||| ||
Sbjct 69382 ATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 69439
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||| || || | ||| || || || |||||||| |||||
Sbjct 69440 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 69497
Query 34967 CACAAAGATCTGCATATT 34984
|| || |||||||| ||
Sbjct 69498 GACGAAAATCTGCATCTT 69515
>seq422
Length=18081
Score = 89.7 bits (98), Expect = 3e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| ||
Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| ||| |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | ||| ||||| || ||||| || |||||||| ||
Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629429878512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |