Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq160 96.9 4e-15
>seq160
Length=70483
Score = 96.9 bits (106), Expect = 4e-15
Identities = 268/409 (66%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215
||||| ||||| || || ||||| | | ||| ||| | || | || | ||||
Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 49591
Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275
|| | ||| || ||||| ||||| | || || || | || | | ||||| |||||
Sbjct 49592 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCG 49651
Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335
||| | || ||||| || || | | ||||| ||||| || || | || ||
Sbjct 49652 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATG 49711
Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395
|| | |||| || || || ||||| || ||||| | |||||||||||| ||||| |
Sbjct 49712 GCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 49771
Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455
|||| | ||| || | |||||| || || |||| ||||| || | ||| ||| ||
Sbjct 49772 ACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 49831
Query 48456 CTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513
| || | || | || || || |||||||| ||||| || || || | |
Sbjct 49832 GTGGCACGGATGCGGTGGACGTTCAA--GCCGATACCACCAGCCATCTTGGAAATCATGG 49889
Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562
||||| || || || ||||| || || || || || ||||| ||||
Sbjct 49890 CACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCAT 49938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562101394216560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |