Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq160 96.9 4e-15 >seq160 Length=70483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 268/409 (66%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| ||||| || || ||||| | | ||| ||| | || | || | |||| Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 49591 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | || || || | || | | ||||| ||||| Sbjct 49592 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCG 49651 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||| | || ||||| || || | | ||||| ||||| || || | || || Sbjct 49652 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATG 49711 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || || ||||| || ||||| | |||||||||||| ||||| | Sbjct 49712 GCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 49771 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| || | |||||| || || |||| ||||| || | ||| ||| || Sbjct 49772 ACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 49831 Query 48456 CTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | || | || | || || || |||||||| ||||| || || || | | Sbjct 49832 GTGGCACGGATGCGGTGGACGTTCAA--GCCGATACCACCAGCCATCTTGGAAATCATGG 49889 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| || || || ||||| || || || || || ||||| |||| Sbjct 49890 CACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCAT 49938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101394216560