Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq155 107 2e-18 >seq155 Length=71478 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | ||||| | ||| || || |||| || | || | ||| || | ||| Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 19213 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 19154 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| ||||| |||| |||||||||||||| ||||| | ||||| |||||||| Sbjct 19153 GAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 19094 Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969 | |||| |||||| ||||| || Sbjct 19093 ACAAGACCGCTGGTATAGCTGGCA 19070 Score = 100 bits (110), Expect = 2e-16 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| || |||||||||| | ||| | Sbjct 18974 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGATTCCAGGCGCTGAGGATCA 18915 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 | | || ||| | || ||||| | || || | | |||| |||||| | Sbjct 18914 TTCTCCGGTCGTAAGGATTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGT 18861 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | |||||| ||| | |||| |||||| || || || |||| || Sbjct 18860 CGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 18801 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 18800 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 18741 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || |||| ||| | Sbjct 18740 CGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTTGAGGGCGA 18681 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 |||| |||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 18680 GGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 18622 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 18621 ACCCGTTTTGTTGTGAGCAGAGG 18599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612351051542