Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq155 107 2e-18
>seq155
Length=71478
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
||| || || | ||||| | ||| || || |||| || | || | ||| || | |||
Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
|||||| |||||||||| | |||| | ||| || | || || ||||||||
Sbjct 19213 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 19154
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
| ||||| ||||| |||| |||||||||||||| ||||| | ||||| ||||||||
Sbjct 19153 GAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 19094
Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969
| |||| |||||| ||||| ||
Sbjct 19093 ACAAGACCGCTGGTATAGCTGGCA 19070
Score = 100 bits (110), Expect = 2e-16
Identities = 253/383 (66%), Gaps = 14/383 (4%)
Strand=Plus/Minus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
||||||| || || || |||||| |||||| || |||||||||| | ||| |
Sbjct 18974 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGATTCCAGGCGCTGAGGATCA 18915
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
| | || ||| | || ||||| | || || | | |||| |||||| |
Sbjct 18914 TTCTCCGGTCGTAAGGATTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGT 18861
Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181
| || ||| | || | |||||| ||| | |||| |||||| || || || |||| ||
Sbjct 18860 CGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 18801
Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241
|||| |||||||| || || |||||||| || | || | ||| | ||| |||
Sbjct 18800 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 18741
Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301
| | || || | ||| || ||| ||||||||||||| || || |||| ||| |
Sbjct 18740 CGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTTGAGGGCGA 18681
Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360
|||| |||| ||||| || |||||| || ||||| | | |||||| |||
Sbjct 18680 GGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 18622
Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383
|||| || || ||||| || ||
Sbjct 18621 ACCCGTTTTGTTGTGAGCAGAGG 18599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408612351051542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |