Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq378 105 5e-18 seq434 104 2e-17 >seq378 Length=193057 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| || | | | ||| |||| || | |||| Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGC 156556 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||| || || ||||| ||||||| |||| ||||||||||| ||||||| Sbjct 156555 TTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTT 156496 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| | || ||||||| || || || || || ||| Sbjct 156495 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 156436 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 156435 AACGTCTTGACGAAGATCTGCAT 156413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || ||||| ||||| || | | ||| Sbjct 156858 AGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGA 156799 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||||||| ||||| |||| ||||| || || | |||| ||||||| Sbjct 156798 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCC 156739 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | |||||||| | || Sbjct 156738 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 156679 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || ||||| ||||| Sbjct 156678 ATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq434 Length=177494 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || || || ||| || || || ||||| || || || |||| Sbjct 69295 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 69354 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| || || |||| |||||| || |||| ||||| ||||||| Sbjct 69355 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 69414 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||| | || Sbjct 69415 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 69474 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||| | || || || |||||||||||| || Sbjct 69475 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 69516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932706618442