Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq160 367 2e-96 seq1011 181 2e-40 >seq160 Length=70483 Score = 367 bits (406), Expect = 2e-96 Identities = 1143/1743 (66%), Gaps = 86/1743 (5%) Strand=Plus/Plus Query 212568 GGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCC---CTTGCCC 212624 ||| |||| || |||| || || || ||||||||||||||||| || || ||| | Sbjct 48362 GGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTT---C 48418 Query 212625 CAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTG 212683 ||||| ||| | |||||| |||| | | ||| | ||| ||| | || || Sbjct 48419 CAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATTGTGGGGTCCTTCATG 48469 Query 212684 GCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCAT 212743 || | |||||||||||| ||| || ||||| | | | ||||| ||||| Sbjct 48470 -------TGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCAT 48522 Query 212744 GTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTC 212803 | | || | | ||| || | |||||| ||||||||| | | | |||| || || Sbjct 48523 CTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTC 48582 Query 212804 TGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCAT 212860 |||| | |||||||||||| | || || | | ||| | | | | ||| Sbjct 48583 GGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTT---CAT 48639 Query 212861 GTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTG 212920 | | ||| ||||||||| || ||||| ||||| || |||||||| | ||| Sbjct 48640 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTG 48699 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| || || | || || | | |||||| | ||| || ||||||||||||| || ||| Sbjct 48700 GAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTC 48759 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 |||||| ||||||||||| | || ||||| || ||||| || || | || | ||||| Sbjct 48760 GTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTT 48819 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | | |||||||| ||| | | ||| ||||||| || ||| ||| Sbjct 48820 GCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCG------AGTCCCA-CTCCCA--CAG 48870 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 ||| | ||| || | ||||||||| || || | |||||| | | | || || Sbjct 48871 GTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 48930 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || | | || ||||| || | | ||||||| | ||| || |||| ||||| || Sbjct 48931 CTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGC 48990 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 || |||||| || ||||| |||| | |||| |||| ||||| || ||| ||||| Sbjct 48991 GTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGG 49050 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| || |||| | || || || |||||||| || | || ||||||| ||| Sbjct 49051 CATGCGCAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTG 49110 Query 213341 TCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || ||| ||| | ||||| | ||||| |||| || ||||||||||| Sbjct 49111 GCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTT 49170 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGAC---ATGGGCCAGGTACTCGTGATTGAACACGTA 213457 ||||||||| |||| || || || |||| || | || | || |||| Sbjct 49171 AAGGTTGCGGACAACCACCTTAGTAACTTCATGG---AGCTTCT------TAAAGTCGTA 49221 Query 213458 GCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC 213511 || || || | ||| | |||| ||||| | ||||||||||||||| || Sbjct 49222 GCAGCCTTCGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGC 49281 Query 213512 CACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 ||||| | | | | |||||| |||||||||||||| |||||| || |||||||| Sbjct 49282 AACCTCGTCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGT 49341 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGG 213630 |||||||||| ||||| ||| ||| | |||| |||||||||||||||| ||||| Sbjct 49342 TCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGT 49400 Query 213631 ACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 || ||||| ||||| | ||| || ||| || | | || | | Sbjct 49401 TACCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCACAGCTTCTGAGCGCGAATGGTCT 49460 Query 213691 GCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCC 213750 | | || ||| | | |||||||| || || | | | ||| || | ||| Sbjct 49461 TGCGGCCACGTCCCTCCTT---CTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCAT 49517 Query 213751 AGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGAGGCTCCAGTCCCCGT- 213804 || | ||| || | || |||| || || || |||||||| |||||||| || Sbjct 49518 AG---CAGTC-AG-CAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTT 49572 Query 213805 CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGG 213864 | |||| || | || |||||| || || || | ||| || || ||||| ||| | | Sbjct 49573 CTTCTCA-ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAG 49631 Query 213865 TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGT 213924 | ||| ||| || ||| ||||| ||||| || || ||||||| ||| |||| Sbjct 49632 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGT 49691 Query 213925 GCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCA 213981 |||| ||||| | ||||||||||||||| || || | |||| || ||||| || || Sbjct 49692 GCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACAT 49751 Query 213982 GCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGG 214041 ||||| ||||||| | || || | ||| | | ||||| || ||||||| Sbjct 49752 ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGG 49811 Query 214042 TTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAG----AGCCCTATGCCA 214097 | || || || || ||||||| ||| | || ||| |||| | || || ||| Sbjct 49812 TGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGG-TGGACGTTCAAGCCGATACCA 49867 Query 214098 CCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTG 214157 || || |||||| |||||||| || | ||| ||| || ||| || | |||||| Sbjct 49868 CCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTG 49927 Query 214158 TCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTT 214216 ||||| | | || | ||||||||| || |||| ||||||| | | || | ||| Sbjct 49928 TCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCCTGCGGGGTACCGGCGTT 49986 Query 214217 GAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAG 214276 ||| || |||||| ||||||| | | |||||| |||| | ||| |||| |||||||| Sbjct 49987 GAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 50046 Query 214277 GAC 214279 ||| Sbjct 50047 GAC 50049 >seq1011 Length=119094 Score = 181 bits (200), Expect = 2e-40 Identities = 552/846 (65%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | || |||||||| Sbjct 29800 CTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTC 29741 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| |||||||||| | || || | | | || ||| | | |||| Sbjct 29740 CATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCT-TCTCGTTGCCGAGAGCGACAAGCA 29682 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || || |||||||||| | ||| ||| || ||||||||| | |||| Sbjct 29681 GACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGG 29622 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || | || |||| ||| || | || || || | || | Sbjct 29621 CGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGATGATGT 29562 Query 48078 ----GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | | | | | || | |||| ||| ||||| | | |||| |||| Sbjct 29561 CACGGATCACCTCCTTGCTGGCACGGTTC-TTG---AGGTGAGAG---TGCAGCAGGCAG 29509 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| || ||||| || ||||||| ||||||| ||| |||||| Sbjct 29508 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 29449 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | || || | || ||||||||| Sbjct 29448 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 29389 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || || || | || | || |||| ||||||||| |||| Sbjct 29388 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 29329 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | |||||||| |||||||| ||||| || || ||||| ||||| |||| Sbjct 29328 CACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 29269 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | ||| || | ||| | ||||| || ||| | ||| |||| Sbjct 29268 AGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCG 29209 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||| ||||||||| | ||||| | ||| Sbjct 29208 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGG 29149 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | ||| | ||| ||||| ||||| || ||||| || || |||||| Sbjct 29148 ACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAG 29089 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCCAGCC 48609 ||||| |||| || | ||| | ||||| | | | || || |||||| | Sbjct 29088 AAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCCAGTC 29030 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | || ||| ||| || | ||||| | ||||||||||| || || || || Sbjct 29029 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTT 28970 Query 48670 GTACAT 48675 |||||| Sbjct 28969 GTACAT 28964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520527055360